Scaffold Ga0049081

Basic Information
Taxon OID	3300005581 Open in IMG/M
Scaffold ID	Ga0049081_10001149 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005581 Open in IMG/M

Scaffold ID

Ga0049081_10001149 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9982
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (31.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9982

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (31.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F023346	Metagenome / Metatranscriptome	210	Y
F031030	Metagenome / Metatranscriptome	183	N
F045085	Metagenome / Metatranscriptome	153	Y
F079812	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000114912	F006260	AGGA	MEKELTIKDKVNNPIIIQHDDLKFDGKTITIPGYYVGVLLDYVKDYKLDGVPQVDIEDYQLFRNFLYDIEEHKNRGN*
Ga0049081_1000114913	F031030	GAGG	MGMFDDVVCKYPLPLPEDPKGYCNNKYQTKNFDNAMDSYEIREDGTLWLRCAEFEYTDGNPNAKSLIEKLPTRKEIKVWWQQIFPITDTVRLYAYDSDTNDTYDYWIEYDVIFVDGKVTGAKLLEFTATDNSERKERHRKDVEYWTNRQKFEYTLFYRFIGKPYNKTISLICRSIHTSATWITYKIWKVERFLKI*
Ga0049081_1000114914	F001840	N/A	MKDQDSIFLICDCYEHGLLVEKFKDEHEVSISLFERGLKGRTLCWLERLRWCWQILRYGKPWSDFVILNTENQKQLKEFLNECK*
Ga0049081_1000114917	F045085	N/A	MNKIINLILGLIFGTIFAVGLLLVLAIFFAVLIPFIFYFTVKEVLRALIKN*
Ga0049081_1000114918	F023346	N/A	MNNTISKNIILTYAKALRTIQKEQIDPYINLIEKELIKLYPELEDREDNALNWAYDILNAESNTEVVETLTRLNEIISNERKEKWTCSYCGKNTYNDDVEYLFGTNHIGCVLEEDIKNREHSDPDYILDARLQKISDIERKLDIYESELNKLHAELVHLRSDYHHEPTN*
Ga0049081_1000114922	F079812	N/A	MSTKYIMDGKNVRIGYVKDSGNVVYAHGPNGENVGYYSKSSDTTFDRNGKRYGFGDLTNALVFESARKI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049081_10001149

Overview

Ecosystem & Geography

Associated Families

Sequences