Scaffold Ga0049081_10000507

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000507
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14939
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (32.14%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F011218	Metagenome / Metatranscriptome	293	N
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F039112	Metagenome	164	Y
F082108	Metagenome	113	N
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000050710	F024249	N/A	MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDDKNSDEILAKWLGYVHVADFYNYEMQITYVEETYNEDGYTNTTAYPKTCIYGETPKLADDIYIKWMNWATQVASEE*
Ga0049081_1000050714	F025437	GAG	MQMRPFELRQLKVSKEQYFARLGFSDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVAELSKYKELYLTLKRTFDEF*
Ga0049081_1000050715	F010908	GAGG	MKQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKVITNHKEGRAKLCKCK*
Ga0049081_1000050716	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDSEQMIYEIQRLQGIIEDQL*
Ga0049081_1000050718	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNPYGGSTGGGYTPSAPKNDDTRSLSIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGQSAAAASHTEHFANRNDPF*
Ga0049081_1000050719	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKVAELQARIDVLEQQSILFI*
Ga0049081_1000050720	F009600	N/A	MRLSDTRQLTYKVVVGKVPSLNAFYASKHWTVRAKAKTKHCQEVMLQLAAYDLQQITDVQILCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRTYVQSLKMVHDKSIPKDTAEITFTGLVVTE*
Ga0049081_1000050721	F011218	N/A	MQYYTNPAKRRKIDFILEECATLMANCESDYNSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN*
Ga0049081_1000050723	F014228	N/A	MNGSTPSKLNPNRLVMWTILLTATLAVVSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVLVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLALILVGAYIVKRWVDKLTE*
Ga0049081_1000050726	F093771	N/A	MRFVSWYLPTRTPLTKMTKESADSVVTSWSLTGTGLLVSYVHQAFGLLVLVASLGYTLWKWRRDYLKDKGAN*
Ga0049081_100005074	F082108	AGG	MLYIVTPCSRPQNLVRLKQHIPPYATWVVMMDASTNYKGATSASITHYSSRTGNAGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFIEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPYDLPNLRFEMAYDADGTFAQAASEQGTLICVEQYLCYYNALK*