Scaffold Ga0049083_10002666

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10002666
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6776
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F014140	Metagenome / Metatranscriptome	265	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_1000266610	F000671	GAGG	MEKILCYSCNKNKNQLNLKKSSLLPINLLICETCISSRFEPRWVVILAGRQMGSEYVKEFVVKKRYVGNEISASELLV*
Ga0049083_1000266613	F000473	N/A	MFIDKNKNHFKHGINQWTGEPNKPVFYTKEMAQKVREIKKPVFDLLMDIIRYPDFLAIRLYEDNFLQYEGTKKEMVIDYVNKVKKLIESYGVRCELEGAPSERVL*
Ga0049083_1000266616	F014140	N/A	MNTYKVKLDVEIEVEAFNQEDASEYVHDIFNLDDEIKKVSIVKISQK*
Ga0049083_100026669	F077310	N/A	MNVSTSQIILAILASILSGFGTALYGSIREKKREAFRAQEKIQIDLKLELKDLEIKLYQLEKDLNEWKDKYYEAIQELIAVRAELEDTLIKLTHIQIHLNEG*