Scaffold Ga0049083_10000760

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10000760
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11887
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (53.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F007921	Metagenome / Metatranscriptome	342	Y
F038246	Metagenome	166	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_1000076023	F007921	AGGCGG	MIDWLINRIFRWDTLRHAIFDEVRLYQSVDRSMWEYEKEGPTNLTWSEGDTWYGWTYNSNAKRYYFDDIGNKSLIGLWEDQWLAEADKNGTM*
Ga0049083_1000076028	F038246	AGGA	MGILDNFEAYLEAEDQETDKCHYCQALAIYNDLAEVEQNYQVVGVCACHAFKGLSS*
Ga0049083_1000076030	F066789	GGAGG	MSDAICSKYGCDYQLDLDGQVTCGNCGAMDDDMPNPTNVDNLAFESQVDFE*
Ga0049083_100007607	F001176	GGGGG	MSENGTGMASPSNSEPSGAVTSREATAKSPSQGKFRSGMNNPKPKIDTNKHGIRRETSLAPKKVGRKKI*