NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073993_141794

Scaffold Ga0073993_141794


Overview

Basic Information
Taxon OID3300005570 Open in IMG/M
Scaffold IDGa0073993_141794 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer in Utah, USA - Crystal Geyser CG13 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)556
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014836Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0073993_1417941F014836N/AWTHKENWLQLTEPTWSHFVSISGDNTITVDQERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPEISRVQGYRLPTGVVRLVIQGKGFGFVSEDILVTATEHYENDDDANIEEVEGFMYTCEDTTLTFRDAKIECNIPADHLMPYALNVQVSANGHTTEYALLSEYIK*
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