Scaffold Ga0068855_100037706

Overview

Basic Information

• Taxon OID: 3300005563
• Scaffold ID: Ga0068855_100037706
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5745
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062194	Metagenome / Metatranscriptome	131	N
F071504	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068855_1000377064	F062194	AGG	MDDEAWELAGVIARNETRATTIVAALAESQSVSLSLLPLSAYTAEIRRDWRESGKSTDPATLADDLTVIFDRLGVAVRTAVAQGDWDWGDHPPSSFALWLERTLAELRATADGVP*
Ga0068855_1000377066	F071504	AGGAGG	MSFNIDSNLRLEFGRQRQAELLQRAQRDKLEHALSAEIGSDAGLRAHQSRSFLHVRRNRQALPREAR*