Scaffold Ga0070672_100000404

Overview

Basic Information

• Taxon OID: 3300005543
• Scaffold ID: Ga0070672_100000404
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24981
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008503	Metagenome	332	Y
F087671	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070672_10000040411	F008503	GGA	MKKALLVVAAIALVIWVISWFRNEDAVAKSTARPWPGGMGALDSADQLPPSHANDASRTLKALADALPKNDAAGDFVAREISRGELMIGVPPRLPDVSAIRELLLREPMVWERQEGIGGDNGSQETRAMQMNVARALVADALAKARANDPAGWEELHAVWKLARSLDGHPQVMVQTAALSMARMINAVAWKLPLPAPAWLGELQQRESVRPLLEAFRFQTASYSKDGLRIFPTMMLAESVDRDRGIAEELVRETRCDVSPRMNDLGTDLTSVWRRAFRYRAEREATANALRVREGKPIDPRSRCSDGGWSFDGTTLRFSREIATAAPDRPMPLVLRVTVGRPSPGV*
Ga0070672_10000040421	F087671	AGTAGG	MKSCEQHRHEHRQLPCPWPDCPNGEGAPDLFEVPRHTGAGMMTRAEGHFDVSPRPRAFERKGWTCEKCGVSGWAWVEVGAEPRIDRCPHRRTPTVTPLRRT*