Scaffold Ga0066697_10004210

Overview

Basic Information

• Taxon OID: 3300005540
• Scaffold ID: Ga0066697_10004210
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6804
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000259	Metagenome / Metatranscriptome	1441	Y
F011069	Metagenome	295	Y
F088603	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066697_1000421013	F000259	AGGA	MRLKLAGGDRLKGSGALCAGAHELSFIDRRAGGRVVRSLSAIR*
Ga0066697_1000421015	F088603	AGCAG	MRLKLAGLSFLRESEWLCSGGHRTSSTRSCAGEPVARSLSAIR*
Ga0066697_100042108	F011069	GAG	MRLNLPGAIALKEAVESRPGRHGTSFNASCAGRRVARSLSAIR*