Basic Information | |
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Taxon OID | 3300005538 Open in IMG/M |
Scaffold ID | Ga0070731_10000153 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 126940 |
Total Scaffold Genes | 137 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 98 (71.53%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010182 | Metagenome / Metatranscriptome | 307 | Y |
F015635 | Metagenome / Metatranscriptome | 253 | Y |
F064123 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070731_10000153106 | F015635 | GGA | VSQSTPLAGGATLLFSPRMQGTRGSSFQPVEAGAVLAGTVGMCGGAGALAGWAAGNAGYGALAGIVVGIPAGVYAVYHRFKGYFS* |
Ga0070731_1000015324 | F064123 | AGGAGG | MARKTVFVSDLSGKEISNERDAVTITVKFGDARRGQYSVDAHPDDAEVKRLISAGTQQARRGRRPKAASS* |
Ga0070731_1000015350 | F010182 | AGGAG | MDVIGTDFLAGSILSLVLPVGLLVAVGIWWLTILRRRDRDV* |
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