Scaffold Ga0070730_10038423

Overview

Basic Information

• Taxon OID: 3300005537
• Scaffold ID: Ga0070730_10038423
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3545
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000739	Metagenome / Metatranscriptome	913	Y
F016552	Metagenome / Metatranscriptome	246	Y
F070523	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_100384231	F000739	N/A	EQGNSLRLGLCARYNQMTRIEIWLKGLFAAAISGGAGGVLTGFAAVGIDPQHFNLQTGIGATLRIAAAAALINAVIGVAAYLQKSPLPSE*
Ga0070730_100384232	F070523	GGA	MKKDKISLLPDERVAIHAKLGSILKHGDPAEVLLVTILLLALRPESQHKAPKRKAQRKQSRAL*
Ga0070730_100384237	F016552	N/A	MGFLWALLTLVLHLVPGTIAPAHAQGSRKDDIVFNSRGIPLAGATVRVCAMPASGQPCAPLALIYSDAALTQALANPTATDGLGNYSFYAAPGKYEIEISGPGITTKQIPNVILPNDPSSPTFSGVSAFSMNLSGNLTVNGNTSVIGNLASGTLNLTNQSTPPGAAGSGTVNLYTKTADKLLYYKDETGTETGPLGAGAQTNVSNNWPAQQNFNANQRFKGPNPYVDITAFGARTANPNLAPAAVGITANCTATNTQVTISSASTFVNGDGVVLYGC