Scaffold Ga0070730

Basic Information
Taxon OID	3300005537 Open in IMG/M
Scaffold ID	Ga0070730_10000192 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	78727
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (70.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

78727

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (70.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005386	Metagenome / Metatranscriptome	402	Y
F043870	Metagenome / Metatranscriptome	155	Y
F043969	Metagenome / Metatranscriptome	155	Y
F074640	Metagenome	119	Y
F080540	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_1000019223	F080540	GGAGG	LADAGEERLRFAWKNFEDQQAIIRAADLKAGYLVTFLLFFGASTIPLGREVLPKLRWDGAGAFASGLYAAAYALSVIGFVWSMYLISHVMTPRVAKHHKEPKPGADLLYFGHVARFESSDRYFEAVMRAEPEEILRNVTDQIFELALIAKAKLDNLRAFSQSFKLTLVAWFIGTAVGFWIMSWK*
Ga0070730_1000019251	F043969	GGAG	MPNDPHRTIRNWFIGSIGALIAVVLVARPVLAQRHVIEVLADKDSRYKIAGQSKAKITVKAGEQLLLRITARKGTSWDEDGSVHGFVLLRTKDHSKVPGWDFSLKPGTQEFEVSAPAEAGDYEVICTVICSDEHEGMRMKFVVLP*
Ga0070730_1000019264	F074640	AGGA	LWRDWKRSCFSTGVPRLLAGLPHRNGALDVALTKLSLRFVLILTAGIVLTSVAPVCRAQADGIAGKYECAHVKVHGKLKACSSAQLTLKNDGRFELRGWEGEYVVSGEYVELSDKSVKSKAKLEPGYKIVFRYHGKDGIVEVTYERRLRAPGGEALS*
Ga0070730_1000019276	F005386	AGGGGG	MKSGYLEQLKSDISARFERDLGKPTAKPAVKPTLEDTALEQQKQDHFARLLMAEALRQIK
Ga0070730_1000019279	F043870	N/A	FSVLNKLSPGPKGTSEAIEFICPRAAVKQFVNAEITNQQLLDQSFILVNGVRIALNLQLVE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070730_10000192

Overview

Ecosystem & Geography

Associated Families

Sequences