Scaffold Ga0070730_10000063

Overview

Basic Information

• Taxon OID: 3300005537
• Scaffold ID: Ga0070730_10000063
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132083
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 105 (79.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016196	Metagenome / Metatranscriptome	249	Y
F059161	Metagenome / Metatranscriptome	134	Y
F084158	Metagenome	112	Y
F093393	Metagenome	106	Y
F099197	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_10000063114	F084158	GGA	MPNRARTKRPIRFRNHGDSPLAPAMPVNRELLLKLAQELQQMTIESMEGLGVSRKEQMVTYRRASKGVGSKDRPSTRLMDRISAIADLLSSWRRDRRYIQPDGSPRVLPIHGKGASLETLAKKFVPEMPVNEVLTAITRHGEATAYQGDKVALVGGSVLVTPKTAEMALALLVNRIGRVSKTLLHNVSLPEGNKGQGRFERHVFGVLSEREFNEYARVMRTQLQDLCDRAESGLELAADKKGRKRKACGIGIFVFRDD*
Ga0070730_10000063116	F099197	GGA	MAKGRPTSTRRPRRASSLLGPPADRELLLRLVVEMNHIAQDVFLKLGVSPEEQRVATLRARKMKTRLRPSARLMAAIHGAGDVLSTWRRDRRYLGSDGSPRVLPIRGRGATLETLVRKCVPQMTLEEVLTYICSHGEATLYKRDRVALLGSAAVLTQRTPEITLAWMLTQFRHVADTTLRNAVIPAHQVKGVGLFQRQVAGWLSEKNFRLYAKEVFPQLQELCAQLEAGLSIDRRAKPRANRKECGVGLFVYQDSGNIG*
Ga0070730_10000063122	F059161	AGGA	VSASAATGALALMIRACALVLFMVMSMAEPFLAVVLSALAIGCFFVAVLFGFIFHAPFPHRWFVLVASVVFLLVYVLYRFVMQGVQRLLR*
Ga0070730_1000006325	F016196	GGAG	MTDVYVYRFMRRGPAGENILSERRATLETIKGKGEAVMESQIVVDHTEVDGNGFLIGSAGNESHPMVELWAEIRSLERRANSRDNEALTLGESTEGQRIYSLHLESRELRNQAQRLKKQRADAMASELGNRSDGQDFLDFVGSPTTG*
Ga0070730_1000006397	F093393	GGAG	VRPKKRNSIRESSATRNRSSPAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*