Scaffold Ga0070697_100003743

Overview

Basic Information

• Taxon OID: 3300005536
• Scaffold ID: Ga0070697_100003743
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11674
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009672	Metagenome / Metatranscriptome	314	N
F022852	Metagenome / Metatranscriptome	212	N
F023823	Metagenome	208	N
F073400	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070697_10000374310	F022852	N/A	MLGLTVTIPYSVRIPRELLDEMRRLYDRMEPPKATFSAVLSHIVKLGWDSYKVQKNGEVSLQKVAVAAYPRRIHDQALQR*
Ga0070697_10000374316	F009672	GAGG	LASMSARLLDTTPRWLSLTLGCSAGALAITGIGFIFGQLVAFDITPFTLLLHLLLALAVSSWILNLRIRINPDRKPLLAIGVAIVVGSIWSSVQQWIGYFQTGVVSDIMLVAGATLMD
Ga0070697_1000037437	F023823	AGGCGG	MELGVEAKQGFDQALVDSTIAALDALGPTVKESIFLLLQRRNSISPDQIPKLVAEFVKALQDVLGPTSRVVEKLIIAGLIARKQVPANVAQGRRLLEVVGAVRLSQVSRS*
Ga0070697_1000037439	F073400	GAGG	MRTSQLKRFINIDVVGQLDNGLFFEGHVIDMAGRPSVIDLDGRGTQQISAPRVKWLTRAMRYC*