NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070697_100003743

Scaffold Ga0070697_100003743


Overview

Basic Information
Taxon OID3300005536 Open in IMG/M
Scaffold IDGa0070697_100003743 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11674
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009672Metagenome / Metatranscriptome314N
F022852Metagenome / Metatranscriptome212N
F023823Metagenome208N
F073400Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0070697_10000374310F022852N/AMLGLTVTIPYSVRIPRELLDEMRRLYDRMEPPKATFSAVLSHIVKLGWDSYKVQKNGEVSLQKVAVAAYPRRIHDQALQR*
Ga0070697_10000374316F009672GAGGLASMSARLLDTTPRWLSLTLGCSAGALAITGIGFIFGQLVAFDITPFTLLLHLLLALAVSSWILNLRIRINPDRKPLLAIGVAIVVGSIWSSVQQWIGYFQTGVVSDIMLVAGATLMD
Ga0070697_1000037437F023823AGGCGGMELGVEAKQGFDQALVDSTIAALDALGPTVKESIFLLLQRRNSISPDQIPKLVAEFVKALQDVLGPTSRVVEKLIIAGLIARKQVPANVAQGRRLLEVVGAVRLSQVSRS*
Ga0070697_1000037439F073400GAGGMRTSQLKRFINIDVVGQLDNGLFFEGHVIDMAGRPSVIDLDGRGTQQISAPRVKWLTRAMRYC*

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