Scaffold Ga0070735

Basic Information
Taxon OID	3300005534 Open in IMG/M
Scaffold ID	Ga0070735_10002361 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17163
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17163

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F003897	Metagenome / Metatranscriptome	463	Y
F011033	Metagenome / Metatranscriptome	296	Y
F083076	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070735_1000236112	F083076	N/A	MAYKAATIEELLAIMKRVQGEKTLTEFAEDLDLSKQYLSNVYNRHKEPSERLLEKLGFTRQTAYVRSPTAANRGKKK*
Ga0070735_1000236116	F000217	AGGAG	MKAKILTFSSRGDTTLLEYDPATANMEEVNEVIAEYEAKTGAQPFDMATGERIDKVTRKQNEVLMVHPIAGG*
Ga0070735_1000236127	F003897	AGGAG	VVSRVASGLLFPAMYNCRECESEINQATEICPHCGADLTLSIPGSTQAAAKPSLQKILLRWGILLGVLLAAIWSFLWFIVPERQGNPTTQAEARAVASLRQVGAALTDYAAAQSGAYPRQFEALGESVRTAAQFAQSVNYQLQYTPGPVEADGSIRSYALQARAGNYGFLSFYTDNSGVVHATRENRAATAQDSPY*
Ga0070735_1000236128	F011033	GAGG	MTGLLSNGFFLLLVKVYGAFLILGPILLRIQFRFNAKLNPQLVPVESLPPDVQQFMAPRVQSIAGLGFEPVGYVNLGKMTSGTGSFMALFSNPRTSEWADVSVVKSATRMAGYIEFITRCSDDAQVDTNTNSTPSVLFPLPSYHVFRFPQVKDAFTLYRAHRMLVQEKIGGSKPVLPPHGQELAELKRRLERYGPRQQERGYMYLDKSGDYFHLTWKGAILGAWRSVWPVSSLRRWWMQSREQDRLRSLGVAQYRPS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070735_10002361

Overview

Ecosystem & Geography

Associated Families

Sequences