Scaffold Ga0070734

Basic Information
Taxon OID	3300005533 Open in IMG/M
Scaffold ID	Ga0070734_10000767 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58191
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (82.81%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

58191

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (82.81%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013030	Metagenome / Metatranscriptome	275	Y
F041937	Metagenome	159	Y
F075253	Metagenome / Metatranscriptome	119	Y
F079111	Metagenome / Metatranscriptome	116	Y
F087507	Metagenome	110	Y
F087825	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_1000076710	F041937	AGGAG	MSIIKKAPAILTREFRLEEPVSLLLDDYAQFIESSPDHVLNSAIKKTLWRDQDYRKWREQKKSTDNGASRRGSEAAKS*
Ga0070734_1000076714	F013030	AGAAGG	MPSSPAVVASMPTTLEPFVSADQAAQFLCVKRRFLLELARRGISGAYALGTGTKRKVWVFRLSELAASIGRNETQTPNLPKPCTITSGSPR*
Ga0070734_1000076721	F075253	N/A	MMVLLVGAAIPLALAWTKILPQEREPFSRPDLPRTKSKPDIVALFFLCNVSLSLIAAIPRIADTLHLEVLAQLLPAAWLETFTMIFLIWLVFVPALAAAYSAVRVNPIRTHLIVGGILVLVLWLLSPTLLGSLTTRP*
Ga0070734_1000076723	F087825	GAG	MSSEATRRAPFMSLKELTDLYRKLVNAFGDPIAISKFGFTVEEAERLFSGFDEDYHISRFFHFTEEPAAQRYSIDGFPATHVAIDPEIESIL*
Ga0070734_1000076751	F079111	GGCGG	MWGFLGTAALLQMYFVRELLAAFALFAILFTVIATVVVGIYVAQKGWELAVARVADSNHPAVEMARRSVNSMEVLARKGVSAAGDLARRQLQRPASGNPLSKAA*
Ga0070734_100007677	F087507	AGG	MIANALLITIAFLLAYGFWLIGELKFMAPYKAVLLHAYGKWIGASIAILFCNVFGAVLLFQRKFLLKNTGRKLSHLDRQFQVGQIEMPAPPQNEEPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070734_10000767

Overview

Ecosystem & Geography

Associated Families

Sequences