Scaffold Ga0070734

Basic Information
Taxon OID	3300005533 Open in IMG/M
Scaffold ID	Ga0070734_10000175 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	172683
Total Scaffold Genes	166 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	125 (75.30%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

172683

Total Scaffold Genes

166 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

125 (75.30%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000132	Metagenome / Metatranscriptome	1972	Y
F003673	Metagenome / Metatranscriptome	474	Y
F006156	Metagenome / Metatranscriptome	380	Y
F010557	Metagenome / Metatranscriptome	302	Y
F011054	Metagenome / Metatranscriptome	296	Y
F093114	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000175124	F093114	AGG	MATHSNQNSEFCERLKVLGYTHHGRIRIYGEDFDLTSNPIEEDNGFAIEAVSRKSGQHRRLRIPIHVVQMIRNNLAATASRKAA*
Ga0070734_10000175128	F011054	AGG	VVGIQFEVLGMYTGTVIPDLMAAVERAERRAEQLRIAEERELHSIFAMQIAVNEGEPVFMGAA*
Ga0070734_100001753	F000132	GGTGG	MWIEKLAAGVVQVQTPIGPRYIFPSFLQRVYFLWMFRNFAVLPHAVLSFRQQRLIDRICSEQSFATIAYSNAMEEAPVIGTIERRPPPPVDSLPPRRPAGREGSLAAEAHPRA*
Ga0070734_1000017545	F010557	GAG	MNRYSSTEPDIGPGETPSEKNKVNGDEMKANTALANYLKSGRQFGDGEKFYLLGFEAALHARNRCKEFDQIASEMASDLEELQRQYPEAAVGEPFTLGFQRGREYYQRLCNESNPG*
Ga0070734_1000017555	F003673	AGGAGG	MKRLLALVILAVCVSAPSFGADVVGHSAKVAGKDTYKAARVSAKDTGKAGKSVVKFLF*
Ga0070734_1000017573	F006156	AGGAG	MKHVQLTTIIFTVALMFSTGAFAKDSNRHSVEIPDSVQVGGTKLKSGKYDVKWQGAGPEIQVSFMLKGKTVATVPGTLKTNDPHVTEDDIVTDTTSANTKTLKEIDFGHNKESVVFEQSGM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070734_10000175

Overview

Ecosystem & Geography

Associated Families

Sequences