Metagenome / Metatranscriptome Family F093114

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093114
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	84 residues
Representative Sequence	MAIQDTRDAELCERLKALGYAHRNRIRMYGEEFDLTSNPIPDENGFAIEAISRKSGRAKRLRIPLSILQMITKDLAASTSFRRAA
Number of Associated Samples	84
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.85 %
% of genes near scaffold ends (potentially truncated)	18.87 %
% of genes from short scaffolds (< 2000 bps)	68.87 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.491 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (23.585 % of family members)
Environment Ontology (ENVO)	Unclassified (33.019 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.019 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.74% β-sheet: 22.12% Coil/Unstructured: 45.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.83.2.1: Activator of Hsp90 ATPase, Aha1	d1usub_	1usu	0.58385
b.34.12.1: BAH domain	d3pt9a2	3pt9	0.58063
b.34.12.1: BAH domain	d3pt9a1	3pt9	0.57894
b.68.1.1: Sialidases (neuraminidases)	d1s0ka3	1s0k	0.57834
b.38.4.1: Dom34/Pelota N-terminal domain-like	d2qi2a1	2qi2	0.57578

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13380	CoA_binding_2	4.72
PF13386	DsbD_2	1.89
PF13444	Acetyltransf_5	1.89
PF01208	URO-D	1.89
PF09827	CRISPR_Cas2	0.94
PF08282	Hydrolase_3	0.94
PF03446	NAD_binding_2	0.94
PF00144	Beta-lactamase	0.94
PF08448	PAS_4	0.94
PF02776	TPP_enzyme_N	0.94
PF06379	RhaT	0.94
PF00691	OmpA	0.94
PF03030	H_PPase	0.94
PF13649	Methyltransf_25	0.94
PF02687	FtsX	0.94
PF08241	Methyltransf_11	0.94
PF13098	Thioredoxin_2	0.94
PF13531	SBP_bac_11	0.94
PF10397	ADSL_C	0.94
PF01663	Phosphodiest	0.94
PF14759	Reductase_C	0.94
PF03466	LysR_substrate	0.94
PF02558	ApbA	0.94
PF04430	DUF498	0.94
PF08238	Sel1	0.94
PF00756	Esterase	0.94
PF14690	zf-ISL3	0.94
PF00149	Metallophos	0.94
PF13426	PAS_9	0.94
PF04055	Radical_SAM	0.94
PF01475	FUR	0.94
PF05235	CHAD	0.94
PF07228	SpoIIE	0.94
PF12724	Flavodoxin_5	0.94
PF13483	Lactamase_B_3	0.94
PF00383	dCMP_cyt_deam_1	0.94
PF13180	PDZ_2	0.94
PF02900	LigB	0.94
PF13620	CarboxypepD_reg	0.94
PF13302	Acetyltransf_3	0.94
PF13090	PP_kinase_C	0.94
PF09335	SNARE_assoc	0.94
PF08450	SGL	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	1.89
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.94
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.94
COG3808	Na+ or H+-translocating membrane pyrophosphatase	Energy production and conversion [C]	0.94
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.94
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.94
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.94
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.94
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.94
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.94
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.94
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.94
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.94
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.94
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.94
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	0.94
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.94
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.32 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.66 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.66 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.89 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.89 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.94 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.89 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.94 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.94 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.89 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.94 %
Paraburkholderia franconis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia franconis	0.94 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10028203	All Organisms → cellular organisms → Bacteria	3338	Open in IMG/M
3300002245\|JGIcombinedJ26739_100617991	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300004080\|Ga0062385_10616102	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300004092\|Ga0062389_101187285	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	949	Open in IMG/M
3300004139\|Ga0058897_10237826	Not Available	561	Open in IMG/M
3300005332\|Ga0066388_107479331	Not Available	548	Open in IMG/M
3300005529\|Ga0070741_10087852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3371	Open in IMG/M
3300005533\|Ga0070734_10000175	All Organisms → cellular organisms → Bacteria	172683	Open in IMG/M
3300005541\|Ga0070733_10234761	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1204	Open in IMG/M
3300006052\|Ga0075029_100263781	Not Available	1091	Open in IMG/M
3300009518\|Ga0116128_1075510	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300009616\|Ga0116111_1055640	Not Available	1122	Open in IMG/M
3300009624\|Ga0116105_1011929	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300010339\|Ga0074046_10283010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1022	Open in IMG/M
3300010339\|Ga0074046_10507093	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	720	Open in IMG/M
3300011120\|Ga0150983_10199152	Not Available	523	Open in IMG/M
3300012206\|Ga0137380_11015108	Not Available	709	Open in IMG/M
3300012209\|Ga0137379_11435616	Not Available	592	Open in IMG/M
3300012209\|Ga0137379_11597132	Not Available	551	Open in IMG/M
3300012353\|Ga0137367_10483410	All Organisms → cellular organisms → Bacteria → Acidobacteria	873	Open in IMG/M
3300012357\|Ga0137384_11571814	Not Available	507	Open in IMG/M
3300012360\|Ga0137375_11295875	Not Available	550	Open in IMG/M
3300014151\|Ga0181539_1012245	All Organisms → cellular organisms → Bacteria → Proteobacteria	5513	Open in IMG/M
3300014155\|Ga0181524_10293513	Not Available	744	Open in IMG/M
3300014161\|Ga0181529_10420174	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300014162\|Ga0181538_10300709	Not Available	872	Open in IMG/M
3300014165\|Ga0181523_10034698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3223	Open in IMG/M
3300014168\|Ga0181534_10169188	Not Available	1128	Open in IMG/M
3300016422\|Ga0182039_10572664	All Organisms → cellular organisms → Bacteria → Acidobacteria	984	Open in IMG/M
3300016702\|Ga0181511_1189757	Not Available	1521	Open in IMG/M
3300016705\|Ga0181507_1117482	Not Available	746	Open in IMG/M
3300016750\|Ga0181505_10035155	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6129	Open in IMG/M
3300017823\|Ga0187818_10000403	All Organisms → cellular organisms → Bacteria	15398	Open in IMG/M
3300017823\|Ga0187818_10010123	All Organisms → cellular organisms → Bacteria	4029	Open in IMG/M
3300017823\|Ga0187818_10014945	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3318	Open in IMG/M
3300017823\|Ga0187818_10046829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1857	Open in IMG/M
3300017924\|Ga0187820_1000527	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8390	Open in IMG/M
3300017924\|Ga0187820_1089167	Not Available	876	Open in IMG/M
3300017925\|Ga0187856_1062071	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300017932\|Ga0187814_10263405	Not Available	655	Open in IMG/M
3300017933\|Ga0187801_10314537	Not Available	639	Open in IMG/M
3300017933\|Ga0187801_10434884	Not Available	549	Open in IMG/M
3300017934\|Ga0187803_10027359	All Organisms → cellular organisms → Bacteria → Acidobacteria	2270	Open in IMG/M
3300017934\|Ga0187803_10257741	Not Available	692	Open in IMG/M
3300017939\|Ga0187775_10027793	All Organisms → cellular organisms → Bacteria → Acidobacteria	1601	Open in IMG/M
3300017943\|Ga0187819_10318814	Not Available	901	Open in IMG/M
3300017946\|Ga0187879_10247138	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300017961\|Ga0187778_10116787	All Organisms → cellular organisms → Bacteria → Acidobacteria	1666	Open in IMG/M
3300017966\|Ga0187776_10011577	All Organisms → cellular organisms → Bacteria → Proteobacteria	4731	Open in IMG/M
3300017995\|Ga0187816_10422975	Not Available	594	Open in IMG/M
3300017996\|Ga0187891_1192311	Not Available	700	Open in IMG/M
3300017999\|Ga0187767_10115547	Not Available	764	Open in IMG/M
3300018003\|Ga0187876_1245801	Not Available	585	Open in IMG/M
3300018006\|Ga0187804_10510519	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300018012\|Ga0187810_10352021	Not Available	614	Open in IMG/M
3300018017\|Ga0187872_10015718	All Organisms → cellular organisms → Bacteria	4518	Open in IMG/M
3300018044\|Ga0187890_10279664	Not Available	938	Open in IMG/M
3300018058\|Ga0187766_10061556	All Organisms → cellular organisms → Bacteria	2223	Open in IMG/M
3300018064\|Ga0187773_10338426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia franconis	853	Open in IMG/M
3300018085\|Ga0187772_10026010	All Organisms → cellular organisms → Bacteria → Acidobacteria	3433	Open in IMG/M
3300018085\|Ga0187772_10096623	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300018088\|Ga0187771_11595441	Not Available	554	Open in IMG/M
3300018468\|Ga0066662_12451289	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300019264\|Ga0187796_1104065	Not Available	543	Open in IMG/M
3300019265\|Ga0187792_1270075	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300021479\|Ga0210410_10141335	Not Available	2143	Open in IMG/M
3300021560\|Ga0126371_10035708	All Organisms → cellular organisms → Bacteria	4685	Open in IMG/M
3300026990\|Ga0207824_1023440	Not Available	656	Open in IMG/M
3300027516\|Ga0207761_1042700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300027521\|Ga0209524_1060398	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	796	Open in IMG/M
3300027703\|Ga0207862_1146355	Not Available	707	Open in IMG/M
3300027825\|Ga0209039_10002954	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13742	Open in IMG/M
3300027854\|Ga0209517_10007272	All Organisms → cellular organisms → Bacteria	13329	Open in IMG/M
3300027867\|Ga0209167_10232646	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	987	Open in IMG/M
3300027898\|Ga0209067_10295555	Not Available	889	Open in IMG/M
3300031954\|Ga0306926_11805902	Not Available	694	Open in IMG/M
3300032180\|Ga0307471_100572048	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300032770\|Ga0335085_10001761	All Organisms → cellular organisms → Bacteria	43605	Open in IMG/M
3300032770\|Ga0335085_10065893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4818	Open in IMG/M
3300032782\|Ga0335082_10126526	All Organisms → cellular organisms → Bacteria	2502	Open in IMG/M
3300032783\|Ga0335079_10663577	All Organisms → cellular organisms → Bacteria → Acidobacteria	1093	Open in IMG/M
3300032805\|Ga0335078_10962102	Not Available	1017	Open in IMG/M
3300032828\|Ga0335080_10118437	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2939	Open in IMG/M
3300032828\|Ga0335080_10190708	All Organisms → cellular organisms → Bacteria → Acidobacteria	2258	Open in IMG/M
3300032829\|Ga0335070_10001946	All Organisms → cellular organisms → Bacteria	23953	Open in IMG/M
3300032829\|Ga0335070_10015559	All Organisms → cellular organisms → Bacteria	8846	Open in IMG/M
3300032829\|Ga0335070_10271886	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1652	Open in IMG/M
3300032829\|Ga0335070_11421162	Not Available	633	Open in IMG/M
3300032829\|Ga0335070_11896016	Not Available	538	Open in IMG/M
3300032892\|Ga0335081_10524039	Not Available	1484	Open in IMG/M
3300032892\|Ga0335081_11346827	All Organisms → cellular organisms → Bacteria → Acidobacteria	802	Open in IMG/M
3300032893\|Ga0335069_10117356	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3338	Open in IMG/M
3300032895\|Ga0335074_10018338	All Organisms → cellular organisms → Bacteria	9873	Open in IMG/M
3300032895\|Ga0335074_10080450	Not Available	4362	Open in IMG/M
3300032895\|Ga0335074_11163679	Not Available	655	Open in IMG/M
3300032897\|Ga0335071_10134220	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2426	Open in IMG/M
3300032898\|Ga0335072_10287285	Not Available	1855	Open in IMG/M
3300032954\|Ga0335083_10150537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2198	Open in IMG/M
3300033004\|Ga0335084_10304511	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300033004\|Ga0335084_10630953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1095	Open in IMG/M
3300033004\|Ga0335084_11015271	Not Available	835	Open in IMG/M
3300033158\|Ga0335077_10262667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1907	Open in IMG/M
3300033402\|Ga0326728_10008888	All Organisms → cellular organisms → Bacteria	24554	Open in IMG/M
3300033402\|Ga0326728_10971082	Not Available	592	Open in IMG/M
3300033433\|Ga0326726_10053177	All Organisms → cellular organisms → Bacteria	3545	Open in IMG/M
3300033433\|Ga0326726_10735240	Not Available	953	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.15%
Aquatic	Environmental → Aquatic	35.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.38%
Freshwater	Environmental → Aquatic → Freshwater	33.96%
Peat	Environmental → Terrestrial → Peat	3.77%
Sediment	Environmental → Aquatic → Sediment	1.89%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	35.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	33.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.98%
Loam	Environmental → Terrestrial → Soil → Loam	7.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	35.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.98%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	14.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	23.58%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	14.15%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.49%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.49%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.66%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.66%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.77%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016705	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019264	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019265	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026990	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100282036	3300000567	Peatlands Soil	MAIQDTRDAELCERLKALGYAHRNRIRMYGEEFDLTSNPIPDENGFAIEAISRKSGRAKRLRIPLSILQMITKDLAASTSFRRAA*
JGIcombinedJ26739_1006179911	3300002245	Forest Soil	MAIQESRDRDSEVGERLKALGYAPPNRIRMYGEEFDLTSNPIQEDNGFAVEAISRKSGIARRLRIPLSILQMITRDLAASPSLPNAA*
Ga0062385_106161021	3300004080	Bog Forest Soil	MAIQGSRAAEVGERLKALGYAHPNRIRMYGEEFDLTSNPIPEENGFAVDAISRKSGLARRLRIPLSILQMITKDLGASTSLRSAA*
Ga0062389_1011872852	3300004092	Bog Forest Soil	MAIQGSRAAEVGERLTVLGYAHPNRIRMYGEEFDLTSNPFPDENGFAVDAISRKSGVARRLRIPLSILQMITKDLAAGTLRSAA*
Ga0058897_102378262	3300004139	Forest Soil	VKTNHTIQPALESCRNHRKPIMAIQGIKDNEVGERLKALGYAHPNRIRMYGEDFDLTSNPIRDENGFAIEAVSRKSGLARRLRIPLSILQMITKDLAASSFHSAA*
Ga0066388_1074793312	3300005332	Tropical Forest Soil	MAHHRNDEVCEKLKALGYAHRMRIRMYGEEFDLTSNPVADESGFAIEAVSRKSGKVRMLRIPLSILEMVSRDVAADASRRAA*
Ga0070741_100878523	3300005529	Surface Soil	MAIQMNREAELCERLKALGYACRNRIRMYGEEFDVTSNPIQDENGFAVEAISRKSGNSRKLRIPLSILQMIAKDLAASTSQSAA*
Ga0070734_10000175124	3300005533	Surface Soil	MATHSNQNSEFCERLKVLGYTHHGRIRIYGEDFDLTSNPIEEDNGFAIEAVSRKSGQHRRLRIPIHVVQMIRNNLAATASRKAA*
Ga0070733_102347613	3300005541	Surface Soil	MATELHENARICERLKTLGYEHKNRIRMYGEEFDLISNPLSDEQGFAIEAVSRKTGHARKLRIPLSVVQMIAKDTVSRRAA*
Ga0075029_1002637812	3300006052	Watersheds	MAIPGGRAAEVGERLKALGYAHPNRIRMYGEEFDLTSNPIPEENGFAVDAISRKSGVARRLRIPLSILQMITKDLAGSTLRSAA*
Ga0116128_10755102	3300009518	Peatland	MAIQLNRNDDLCERLQALGYAHGKRIRVYGEEFDLTSNPIADGSGFAIEAISRKSGHTRMLRIPLSILQMISKDLAASSFLKAA*
Ga0116111_10556401	3300009616	Peatland	MAIQGSRDSEVGERLKALGYTHPNRIRMYGEEFDLTSNPIPEENGFAIEAISRKSGLARRLRIPLSILQMITKDLAASTSFRSAA*
Ga0116105_10119292	3300009624	Peatland	MAIQGSRDNQVGERLKALGYAHPNRIRMYGEEFDLTSNPIPEENGFAIEAISRRSGLARRLRIPLSILQMITKDIAANTSFRDAA*
Ga0074046_102830102	3300010339	Bog Forest Soil	MAIQSGRYGEVAERLKSLGYAHPNRIRMYGEEFELTSNPIPDENGFVIEAISRKSGLARKLRIPLSILQMITKDLAARTSRSAA*
Ga0074046_105070931	3300010339	Bog Forest Soil	MAIQLLSRNDELCERLKALGYAHRQRIRMYGEEFDLTSNPVANGNGFAIEAISRKSGNARMLRIPLSILQMISKDLAAGASRKAA*
Ga0150983_101991521	3300011120	Forest Soil	LESCRNHRKPIMAIQGIKDNEVGERLKALGYAHPNRIRMYGEDFDLTSNPIRDENGFAIEAVSRKSGLARRLRIPLSILQMITKDLAASSFHSAA*
Ga0137380_110151081	3300012206	Vadose Zone Soil	MAIQLLSRNDELCERLKALGYAHRQRIRMYGEEFDLASNPIADGNGFAIEAISRKSGDARMLRIPLSILQMITRDLEASTSRRAA*
Ga0137379_114356161	3300012209	Vadose Zone Soil	SMAIQLLSRNDELCERLKALGYAHRQRIRMYGEEFDLASNPIADGNGFAIEAISRKSGDARMLRIPLSILQMITRDLEASTSRRAA*
Ga0137379_115971321	3300012209	Vadose Zone Soil	MAIQSSRDVELCERLKTLGYALRNRIRMYGEEFDLTSNPLPDENGIAIEAISRKSGIARRLRIPLSILQMINKDLAANGASRKAA*
Ga0137367_104834102	3300012353	Vadose Zone Soil	MAIQSSRDVELCERLKTLGYALRNRIRMYGEEFDLTSNPLPDENGIAIEAISRKSGMARRLRIPLSILQMINKDLAANATSRKAA*
Ga0137384_115718141	3300012357	Vadose Zone Soil	MAIQLLSRNDELCERLKALGYAHRQRIRMYGEEFDLASNPIANGNGFAIEAISRKSGDARMLRIPLSILQMITRDLEASTSRRAA*
Ga0137375_112958751	3300012360	Vadose Zone Soil	MAIQIDRDAELCERLKTLGYACRNRIRMYGEEFDLTSHPIPDENGFAVEAISRKSGNSRKLRIPLSILQ
Ga0181539_10122453	3300014151	Bog	MAIQLNRNDDLCERLQALGYAHGKRIRVYGEEFDLTSNPIADGSGFAIEAISRKSGHTRMLRIPLSILHMISKDLAASSFLKAA*
Ga0181524_102935132	3300014155	Bog	MAIQIDRNAQLCERLKTLGYAHRNRIRMYGEEFDLTSNPTLDEKGAAIEAISRKSGVARSLRIPLSILQMITKDLAARTVSRSAA*
Ga0181529_104201741	3300014161	Bog	MATQASRDSEVSERLKALGYAHPNRIRMYGEEFDLTSNPIPEDNGFAIEAISRTSGQPRRLRIPLSILQMITRDIAASTSFRNAA*
Ga0181538_103007092	3300014162	Bog	MAIQIDRDGQLCERLKTLGYAHRNRIRMYGEEFDLTSNPILDEKGAAIEAISRKSGVARSLRIPLSILQMITKDLAART
Ga0181523_100346982	3300014165	Bog	MAIQGSRAAEVGERLKALGYAHPNRIRMYGEEFDLTSNPIPEENGFAVDATSRKSGLARRLRIPLSILQMVTKDLASSTSLRSAA*
Ga0181534_101691881	3300014168	Bog	MAIQGSRDNQVGERLKALGYAHPNRIRMYGEEFDLTSNPIPEENGFAIEAISRRSGLARRLRIPLSILQMITKDIAASTSF
Ga0182039_105726643	3300016422	Soil	MAIQLNRNDELCERLKALGYAHRKRIKLYGEEFDLTSNPIADGNGFAIQAISRKSGYARMLPIPLSILRMIRRDLEA
Ga0181511_11897572	3300016702	Peatland	LVSGCAQNTSIQPASLSHRNNRGPMAIQIDRNAQLCERLKTLGYAHRNRIRMYGEEFDLTSNPTLDEKGAAIEAISRKSGVARSLRIPLSILQMITKDLAARTVSRSAA
Ga0181507_11174822	3300016705	Peatland	MAIQIDRNAQLCERLKTLGYAHRNRIRMYGEEFDLTSNPTLDEKGAAIEAISRKSGVARSLRIPLSILQMITKDLAARTVSRSAA
Ga0181505_100351551	3300016750	Peatland	MAIQIDRNAQLCERLKTLGYAHRNRIRMYGEEFDLTSNPTLDEKGAAIEAISRKSGVARSLRIPLSILQMITK
Ga0187818_100004033	3300017823	Freshwater Sediment	MAIQGSRSAEVTERLKALGYAHPNRIRMYGEEFDLTSNPIPDENGFAIEAISRKSGVARKLRIPLSVLQMITKDLAASSFRSAA
Ga0187818_100101236	3300017823	Freshwater Sediment	MAIQLNRNDDLCERLKALGYAHGKRIRMYGEEFDLTSNPIADGSGFAIEAISRKSGHSRMLRIPLSILQMISKDLAASSFLKAA
Ga0187818_100149452	3300017823	Freshwater Sediment	VAIQGSRDQEVGERLKALGYARLNRIRMYGEEFDLASDPIPQENGFAIEAVSRKSGLARRVRIPLSILRMITKDLAAGASVRSAA
Ga0187818_100468291	3300017823	Freshwater Sediment	MAIQGCKDGEVTERLKALGYAHANRIRMYGEEFDLISNPIPDDNGFVIEAISRKSGLARRLRIPLSILQMITKDLASSTFRSAA
Ga0187820_10005274	3300017924	Freshwater Sediment	MATHSNQNSEFCERLKVLGYTHHGRIRIYGEDFDLTSNPIEEDNGFAIEAVSRKSGQHRRLRIPIHVVQMIRNNLAATASRKAA
Ga0187820_10891672	3300017924	Freshwater Sediment	MAIQGNRDREVGERLMELGYAHPNRIRMYGEEFDLTSNPIPDQNGFAIEAISRKSGVARRLRIPLSILQMITKDLAPNPSFRNAA
Ga0187856_10620711	3300017925	Peatland	MAIQLNRNDDLCERLQALGYAHGKRIRVYGEEFDLTSNPIADGSGFAIEAISRKSGHTRMLRIPLSILQMISKDLAASSFLKAA
Ga0187814_102634051	3300017932	Freshwater Sediment	MAIQGSRSAEVTERLKALGYAHPNRIRMYGEEFDLTSNPIPEGNGFAIEAISRKSGLARRLRIPLSILQIITKDLAASTASRRAA
Ga0187801_103145372	3300017933	Freshwater Sediment	MLKILKEAELCERLKALGYARGARIRMYGEEFDVTSNPFQDDDGFAIEAILRRSGSATKLRIPLPIIKMITKALAESTTTRAA
Ga0187801_104348841	3300017933	Freshwater Sediment	MAIQGCKDGEVTERLKALGYAHANRIRMYGEEFDLISNPIPDDNGFVIEAISRKSGVARRLRIPLSILQMITKDLAPNPSFRNAA
Ga0187803_100273592	3300017934	Freshwater Sediment	MAILSGRDAELGERLKALGYTHPNRIRMYGEEFDLTSNPIPEEDGFAIEAISRKSGLARRLRIPLSVLQMVTKDLAASTSFRSAA
Ga0187803_102577411	3300017934	Freshwater Sediment	IQTSHDEICERLKVLGYAHGKRIRVYVEEFDLISNPIADRDGIAIEAISRKSGDARRLRIPLSILQMISKDLAASTFPKAA
Ga0187775_100277931	3300017939	Tropical Peatland	KYRKIKFSACDWNDAPLINRNDELCERLKALGYAHRKRIKIYGEDLTSNPIADGNGFTIEAISRKSGDARMLRIPLSILQMITKDFAASASCRAA
Ga0187819_103188142	3300017943	Freshwater Sediment	MAIQINRNDEVCERLKALGYAHRNRITIYGEEFDLTSNPIADGNGFAIEAISRKSGDARMLRIPLSILQMITSDLAASASRRAA
Ga0187879_102471381	3300017946	Peatland	MAIQGSRDNQVGERLKALGYAHPNRIRMYGEEFDLTSNPIPEENGFAIEAISRRSGLARRLRIPLSILQMITKDIAANTSFRDAA
Ga0187778_101167872	3300017961	Tropical Peatland	MAIQLTRSDELRERLKALGYANRKRIRMYGEDFDLTSNPIADGNGFTIEAVSRKSGDARMLRIPLPILQMISKDVGSASRGAASTTKVPVFSF
Ga0187776_100115774	3300017966	Tropical Peatland	MAIQINRNDELCERLKALGYAHRKRIKIYGEEFDLTSNPIADGNGFAIEAISRKSGDARRLRIPLSILQMITKDVAASASRRAA
Ga0187816_104229751	3300017995	Freshwater Sediment	MAIQTSHDEICERLKVLGYAHGKRIRVYGEKFDLISNPIADRDGIAIEAISRKSGDARRLRIPLSILQMISKDLAASTFPKAA
Ga0187891_11923111	3300017996	Peatland	MAIQLNRNDDLCERLQALGYAHGKRIRVYGEEFDLTSNPIADGSGFAIEAISRKSGHTRMLRIPLSILHMISKDLAASSFLKAA
Ga0187767_101155471	3300017999	Tropical Peatland	MAIEGHENARICERLKTLGYEHKNRIRMYGEEFDLISNPISDEQGFAIEAVSRKTGHTRKVRIPLSIVQMITKEATLRRAA
Ga0187876_12458012	3300018003	Peatland	MAIQGSRDSEVGERLKALGYTHPNRIRMYGEEFDLTSNPIPEENGFAIEAISRKSGLARRLRIPLSILQMITKDLAASTSFRSAA
Ga0187804_105105191	3300018006	Freshwater Sediment	MAIQGNRDREVGERLMELGYAHPNRIRMYGEEFDLTSNPIPDQNGFAIEAISRKSGVARRLRIPLSILQMITKDLAASTSFHGAA
Ga0187810_103520212	3300018012	Freshwater Sediment	MAIQTSHDEICERLKVLGYAHGKRIRVYGEKFDLISNPIADRDGIAIEVISRKSGDARRLRIPLSIQMMISKDLAASTF
Ga0187872_100157183	3300018017	Peatland	MAIQGCRDSEVGERLKALGYAHPNRIRMYGEEFDLTSNPIPEENGFAIEAISRKSGLARRLRIPLSILQMITKDLTASTSFRSAA
Ga0187890_102796641	3300018044	Peatland	MAIQGSRDNQVGERLKALGYAHPTRIRMYGEEFDLTSNPIPEENGFAIEAISRRSGLARRLRIPLSILQMITKDIAANTSFRDAA
Ga0187766_100615562	3300018058	Tropical Peatland	MAIQVSREEELCERLKVLGYALQNRIRIYGEEFDLTSNPMADGQGFAIEAVSRKSGLSRKLPIPLSILQMVRNNLAASGRNAA
Ga0187773_103384261	3300018064	Tropical Peatland	DSVSKFLGPMAIQINRNDELCERLKALGYAHRKRIKIYGEEFDLTSNPIADGNGFAIEAISRKSGDARRLRIPLSILQMITKDVAASASRRAA
Ga0187772_100260103	3300018085	Tropical Peatland	MAVLSNRDAELCERLKQLGYAHKKRIRIYGEEFDLTSNPVAEENGYAIEAVSRKSGEARRLRIPLSILQMINNDLAAKAA
Ga0187772_100966232	3300018085	Tropical Peatland	MAVLSNRDAELCERLKQLGYAHKNRIRIYGEEFDLTSNPVAEENGYAIEAVSRKSGEARRLRIPLSILQMINNDLAAKAA
Ga0187771_115954411	3300018088	Tropical Peatland	MAIQIDNRDAELCERLKVLGYADRNRIRIYGEEFDLTSNPMADGNGFAIEAISRKSGQSRKLPIPLSVVQMITNDLSSRRVA
Ga0066662_124512891	3300018468	Grasslands Soil	MTGADRSNAELCEKLKALGYADRNRIRIYGEEFDLLSNPISDEHGVSIEAKSRKSGDARRLRIPLS
Ga0187796_11040651	3300019264	Peatland	MAIEGHENARICERLKTLGYEHKNRIRMYGEEFDLISNPTSDEQGFAIEAVSRKTGHTRKVRIPLSIVQMITKEATLRRAA
Ga0187792_12700751	3300019265	Peatland	MPIQDSRAAKLCERLKTLGYACHNRVRMYGEEFDLTSNPMLDESGAAIDAISRKSGIARRLRIPLSLLEM
Ga0210410_101413352	3300021479	Soil	MAIQGIKDNEVGERLKALGYAHPNRIRMYGEDFDLTSNPIRDENGFAIEAVSRKSGLARRLRIPLSILQMITKDLAASSFHSAA
Ga0126371_100357089	3300021560	Tropical Forest Soil	MAIQIDRNDEVCERLKALGYTHRNRIKIYGEEFDLMSSPIANGNGFAIEAISRKSGNARMLRIPLSILQMITSDLAASAFRSAA
Ga0207824_10234402	3300026990	Tropical Forest Soil	MAVQIDRNSDEVCEKLKALGYAQSSRIKIYGEEFDLTSNPIADGNGFAIEAISRGSGNARMLRIPLSILQMIRSDL
Ga0207761_10427002	3300027516	Tropical Forest Soil	RAIRDPMTIQVSHDAQLCEKLKALGYASQNRIRIYGEEFDLTSNPVRFENGFAVEAISRKSGGARRLRIPLSILQMITKDLASSEASRPV
Ga0209524_10603982	3300027521	Forest Soil	MAIQESRDRDSEVGERLKALGYAPPNRIRMYGEEFDLTSNPIQEDNGFAVEAISRKSGIARRLRIPLSILQMITRDLAASPSLPNAA
Ga0207862_11463551	3300027703	Tropical Forest Soil	MAVQIDRNSDEVCEKLKALGYAQSSRIKIYGEEFDLTSNPIADGNGFAIEAISRGSGNARMLRIPLSILQMIRSDLAAGASRTAA
Ga0209039_100029542	3300027825	Bog Forest Soil	MAIQGGRYVEVAERLKALGYAHPNRIRMYGEEFDLTSNPIPDENGFAIEAVSRKSGLARRLRIPLSILQMITKDLAARTSFRSAA
Ga0209517_1000727214	3300027854	Peatlands Soil	MAIQDTRDAELCERLKALGYAHRNRIRMYGEEFDLTSNPIPDENGFAIEAISRKSGRAKRLRIPLSILQMITKDLAASTSFRRAA
Ga0209167_102326461	3300027867	Surface Soil	MATELHENARICERLKTLGYEHKNRIRMYGEEFDLISNPLSDEQGFAIEAVSRKTGHARKLRIPLSVVQMIAKDTVSRRAA
Ga0209067_102955552	3300027898	Watersheds	MAIQGSRAAEVGERLKALGYAHPNRIRMYGEEFDLTSNPIPEENGFAVDAISRKSGVARRLRIPLSILQMITKDLAVSTLRSAA
Ga0306926_118059021	3300031954	Soil	LAQYRNSQGPMAIQLNRNDELCERLKALGYAHRKRIKLYGEEFDLTSNPIADGNGFAIQAISRKSGYARMLPIPLSILRMIRRDLEASTTRRAA
Ga0307471_1005720481	3300032180	Hardwood Forest Soil	MAIQTNRNDEVCERLKALGYAHRNRIRMYGEEFDLTSNPIANGSGFAVEAISRKSGDTRTLRIPLSILQMISKDLAAGTSRRVA
Ga0335085_100017617	3300032770	Soil	MAIQIDRNDEVCERLKALGYAHRNRIKIYGEEFDLTSNPIADGNGFAIEAISRKSGDARMLRIPLSILQMITSDLAVSASRRAA
Ga0335085_100658933	3300032770	Soil	MAIQSNRDGEVAERLKVLGYAHPNRIRMYGEEFDLTSNPIPEENGFAVEAISRKSGLARRLRIPLSIVQMITKDLAASSSLRRAA
Ga0335082_101265263	3300032782	Soil	MAILTSHDEICERLKVLGYAHGKRIRVYGEEFDLVSNPIADRDGIAIEAISRKSGDARRLRIPLSILQMISKDLAASTLPKAA
Ga0335079_106635771	3300032783	Soil	MAIQMNRDAELCERLKALGYACRNRIRMYGEEFDLTSNPIQDENGFAVEAISRKSGNSRKLRIPLSILQMIARDLATSTFRSAA
Ga0335078_109621021	3300032805	Soil	MAIQMNRDAELCERLKALGYACRNRIRMYGEEFDLASNPIQDENGFAVEAISRKSGNSRKLRIPLSILQMIAKDLATSTFRSAA
Ga0335080_101184375	3300032828	Soil	MAIEVHENAHICERLKTLGYEHKNRIRMYGEEFDLISNPMSDEQGFAIEAVSRKTGNARKLRIPWSIVQMIAKEATLRKAA
Ga0335080_101907083	3300032828	Soil	MAIQMNRDAELCERLKVLGYACRNRIRMYGEEFDLTSNPIQDENGFAVEAISRKSGNSRKLRIPLSILQMVARDLAVSTSQRAA
Ga0335070_1000194610	3300032829	Soil	MAIQTQRDHEVCERLKALGYAHRKSIRMYGEEFDLASNPVPDGNGFAIEAISRKSGTTRMVRIPLSVLQMITNDLQANVSSRAA
Ga0335070_100155593	3300032829	Soil	MAIQISKDDEVCERLKALGYEHRKRIKMYGEEFDLTSNPVAYENGFAIEAISRKSGDARKLRIPLSILQMITRDVEASISREAA
Ga0335070_102718863	3300032829	Soil	MAIQINRNDEVCERLKALGYAHRRRIKMYGEEFDLISNPIAYENGFAIEAISRKSGDAKKLRIPLSILQMITRDVEASDDGGNQCSDDEPA
Ga0335070_114211622	3300032829	Soil	MADRSDGANVQLCERLKTLGYSQCSIVRMYGEEFDLISNPMPEGNGFAVEAVSRKSGSTRKLLIPLSIVQMITNDLAAKGSRAA
Ga0335070_118960162	3300032829	Soil	FMPIRSNTKDAELCERLKALGYAHRNRIRMYGEEFDLTSNPMADDDGFAIDAISRKSGTARRLLIPLSVVQMVTREPKRSAA
Ga0335081_105240393	3300032892	Soil	MLIQINRDHEVCERLKALGYEHRKRIRMYGEEFDLASNPVPDENGFAIEAISRKSGTARMVRIPLSVLRMITSDLEASNSRRVA
Ga0335081_113468272	3300032892	Soil	MAIQMNRDAELCERLKALGYACRNRIRMYGEEFDLASNPIQDENGFAVEAISRKSGNSRKLRIPLSILQMIAKDLATSTYQRAA
Ga0335069_101173564	3300032893	Soil	MTSPSDREVALCERLQTLGYARRNTIRMYGEELDVTSDPIAEGNGFAIEAISRKSGSTRRVLIPLSVVQMVTNDLVRRAA
Ga0335074_100183385	3300032895	Soil	MAVQSSRDIELCERLKTLGYALRNRIRMYGEEFDLTSNPLSDENGFAIEAIARKSGIARRLRIPLSILQMTNKDLAANATSRNAA
Ga0335074_100804503	3300032895	Soil	MTIELKDEAEFCDRLKKLGYTEHNRIRIYGEEFDLTSNPIMEEDGFAVEAICRTSGNTRKLRIPLSIVKMIARDLEYASFHAA
Ga0335074_111636791	3300032895	Soil	MLIQINRDHEVCERLKALGYEHRKRILMYGEEFDLASNPVPDENRFAIEAISRKSGTARMVRIPLSVLRMITSDLEASNSRRVA
Ga0335071_101342203	3300032897	Soil	MAILTSHDEICERLKVLGYAHGKRIRVYGEEFDLVSNPIADRDGIAIEAISRKSGNARRLRIPLSILQMISKDLAASTFPKAA
Ga0335072_102872851	3300032898	Soil	MLIQVNRDHEVCERLKALGYEHRKRILMYGEEFDLASNPVPDENGFAIEAISRKSGTARMVRIPLSVLRMITSDLEASNSRRVA
Ga0335083_101505373	3300032954	Soil	MAIEVHENARICERLKTLGYEHKNRIRMYGEEFDLISNPLSDEQGFAIEAVSRKTGDARKLRIPLSVVQMIAKDTVPRRAA
Ga0335084_103045112	3300033004	Soil	MSNHRNAILCERLQTLGYAQRNTIRMYGEEFQLTSNPVAEGRGFAIEAVSRKSGSVRKLLIPLSVVQMVTNDLNRNPQAA
Ga0335084_106309531	3300033004	Soil	MAILTSHDEICERLKVLGYAHGKRIRVYGEEFDLVSNPIADRDGIAIEAISRKSGDARRLRIPLSILQMISKDLAASTFPKAA
Ga0335084_110152712	3300033004	Soil	MAIQIDRNDEVCERLKALGYAHRNRIKIYGEEFDLTSNPIADGNGFAIEAISRKSGDARMLRIPLSILQMITSDLAASASRRAA
Ga0335077_102626673	3300033158	Soil	MAIQSNRDGEVAERLKVLGYAHPNRIRMYGEEFDLTSNPIPEENGFAVEAISRKSGLARRLRIPLSIVQMITKDLAASTLRSAA
Ga0326728_100088889	3300033402	Peat Soil	MAIQIDRDGQLCERLKTLGYAHRNRIRMYGEEFDLTSNPILDEKGAAIEAISRKSGVARSLRIPLSILQMITKDLAARTVSRSAA
Ga0326728_109710822	3300033402	Peat Soil	MAIQAGRYAEVAERLKALGYAHPNRIRMYGEEFDLTSNPIPDENGFAVEAISRKSGLARRLRIPLSVLQMITKDLAAGSFRSAA
Ga0326726_100531777	3300033433	Peat Soil	MRIQASRAVEFCERLKKLGYAHRNRIRMYGEEFDLTSNPILDESGVAIEAISRKSGIARRLRIPLSILEMITKDLAASTSLRRAA
Ga0326726_107352402	3300033433	Peat Soil	MAIQINRNDELCERLKALGYAHRKRIKMYGEEFDLTSNPIADGNGFAIEAISRKSGDARMLRIPLSILQMISKDLAAGTSRRAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093114

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences