Scaffold Ga0070734_10000152

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000152
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 190614
• Total Scaffold Genes: 186
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 133 (71.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000348	Metagenome / Metatranscriptome	1250	Y
F000883	Metagenome / Metatranscriptome	849	Y
F004902	Metagenome / Metatranscriptome	419	Y
F040248	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000152151	F000348	N/A	LKKALLILVAVVLAPVLVLGLAAVAAGEWHIIGQTGTGDTVSVSSVRVLKKNQRVALVRVEYKDPAHLPQGGPFVEMRARVRFNCASGTATPTSEWFYTRDRSGRDVVSKKSFHDNEFGQNPEGGFADLVSKSVCSQTK*
Ga0070734_1000015238	F040248	AGG	MDMAMKDSSPDQPGTPGTKKPYEKPSFRFEQVFVTTALACGKISVTQSTCTGNTKVS*
Ga0070734_1000015243	F000883	GGAG	MSGQVVLYFEDQADALRFALAAGSVMAGESGRFTTDLVENTTRVSRIRIEDVSGGKMKKTDPDRAA*
Ga0070734_1000015263	F004902	AGAAGG	VKRPFIRVIKWLKEIPVEATCTACNGVTFKAKGSTHRPNLIEYQNSLQQQFDEHLKLVHAEPAQRQ*