Scaffold Ga0070738_10001165

Overview

Basic Information

• Taxon OID: 3300005531
• Scaffold ID: Ga0070738_10001165
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58193
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (81.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001527	Metagenome / Metatranscriptome	678	Y
F013999	Metagenome / Metatranscriptome	266	Y
F017111	Metagenome	242	Y
F018762	Metagenome	233	Y
F050488	Metagenome / Metatranscriptome	145	Y
F055628	Metagenome / Metatranscriptome	138	Y
F085449	Metagenome	111	N
F092401	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070738_1000116510	F013999	AGGAGG	MFRIVSRKRQIELRRFGRPIGSAVATLLLSSPAFAQFGGDRVTSFLSNALGYAQGLGIFGAGFLVIWAIANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG*
Ga0070738_1000116518	F085449	GGA	MVSGAAPSSFRLNSVDRHGRQIDPSVLAAAETIFPKALDYGQSLLGDLAVIANTLEEVAANVSQRMARRDSSGEPEAIRNLPGYVFRAFVREVNRLKNKELAVLDAAVEGQTLAQRLADPARQLEMKVLVKECLARFDFTERDMCWRRLEGFTWDEIGPVHELSAHAAEVRFRNAVRAVKAKLVRSRKPLPPTAQTAQNEQLMPAMEADDDERKT*
Ga0070738_1000116520	F055628	GGAG	MLNKRLWLLLPILSLAIVSAAGCLSRSNVSGVWKGSIESTDKRGHKWQGPAELTLNQNGGAITGTLVFTPPQAGRVQVPITSGVVSKDSLTFSGQNNLPMASVEITFHGSVSGTTLSGTADMTSRSVILGPATETASLSLQKQ*
Ga0070738_100011655	F017111	AGGAG	MTTIPLTLEETQKAKSELGDYTEFYSHLAMQTRRASRVALVACAVALISIVSAILAQLRPPILLRVQDGKVSSLDGSDVQVAQTAVQQQPDNAEKLSFVNTFLSRFVNIDPLTVKRDTTLALNQMTYTLRQQILAQLNQENFVDTVRQNNVTSTLAVKSAELVSGDPYTAIVFGRKRLTTLINGQENEKNLLVKYTIRLAPVARSAANGWAGLEIADYKEEVLQP*
Ga0070738_1000116550	F092401	AGGA	MPFSGNCHSFDSSTLDSSTLKALNDVGMVYGLFKEDLPFRPDHYTCLFVGQTNNLRARLLEHYSNRSIAGVTHFFAETSATEQQQKLREKELIAEFNPSGNKN*
Ga0070738_1000116551	F050488	N/A	VCGVAERSEGEGNRVVEDSWNTHIDYLEDEVKKIDERAGRLEVTIADLENEQKKHALRELVQHLRDAAKEHRKYLALVKRK*
Ga0070738_1000116562	F001527	AGGAG	MIVTSVDILGRHLKPLCSRDNRVMKYESGGSKANTGDRASYHCGVEGCSVRYSSTDGYYMLIGMPDHANPVAEPGVNTARCPIHGRWLYRRLNVDAGPGVGWSCGVEGCDYGHNANTKGDWVRS*
Ga0070738_100011657	F018762	AGGA	MRQHSRKFVFLALTTALALIVPITAHAFIGTMPVIDWTAVVRIGRQIGISQETLNTLGLYVQQYNRVNAGVQEGIRLSRGRQLQGVLNQVVGSQFPQFQQLQRDFNGVLVDPSILRGDLELTYGATPSTDFPISRKKRIDAADATATLGLLEASRAEMVSQQEELDADDIESRAALSSPGGAAKLSAAANGAMLRSQAYDQRLLARLMRLQALNIARDNSLEKEQEQVRQAQLTTVSNMVGGMRLSYGIGDKVGQ*