Scaffold Ga0070741_10366052

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10366052
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1333
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016064	Metagenome / Metatranscriptome	250	Y
F016418	Metagenome / Metatranscriptome	247	Y
F029574	Metagenome / Metatranscriptome	188	Y
F096853	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_103660521	F029574	GGA	MMKEIEKMERSARYIVRLQKNGQYLVVMMRPQWANREIPGFATETEANSWIAGRRH
Ga0070741_103660522	F096853	N/A	MFSMGQKFEGVVGGIRRSAKVIAIVDGGHIGWLEFLDAKAPPFELLRADGPVWKLVPPGPSVRP*
Ga0070741_103660523	F016418	GAGG	MDYRGYEFEQKTLMVGWQVTITKDGKFVHNGNVTKSLSSAMDEAERFVDRVIAEADAAVQR*
Ga0070741_103660524	F016064	N/A	MTHSESPGEAVEYRGYSLQVTYVSPQWQISIGMAVTDRPALSLEKQIVKGWNREETLKRAKTRIDLLIESPSLH*