Scaffold Ga0070741_10012091

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10012091
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15710
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006812	Metagenome / Metatranscriptome	364	Y
F073765	Metagenome / Metatranscriptome	120	N
F087420	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1001209111	F006812	GAGG	MYVLLIVLLVVLPFGTAIACGALTQRAGNIISGWSSIGGLALGIYFFHKCMELLGAG*
Ga0070741_1001209119	F073765	GAGG	MRQLLGKIRAGRDVVEEIYLSEQVRCRECQKTVPIGVEVVSVQKDSKPKKILKRTWYCRAHAGDYESRARGEG*
Ga0070741_1001209120	F087420	GAGG	MTRGLNASAVSVAACAVIALLVTTLPVSPAQAAKPPYTGCVAVTKQEYDSAKRQHMLRTRFSQYLRTGLPGRRQYWYCR*