Scaffold Ga0070741

Basic Information
Taxon OID	3300005529 Open in IMG/M
Scaffold ID	Ga0070741_10010582 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17356
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17356

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013999	Metagenome / Metatranscriptome	266	Y
F052529	Metagenome	142	N
F085449	Metagenome	111	N
F094175	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_100105821	F085449	N/A	MASGAAPSSFRLNSVDRLGRQIDSVVLAAAETVFPRALEYGTNLLGDTAVVANMLEEVAATVSQLIARRDPPGEPTPIRNLPGYVFRAFVREVNRLKNKELAVLDAAIAGHTLAQRLADPARQLEMKLLVEECLAKFDFVERDMCWRRLEGFTWDEIGPVHGLSGHAAEVRFRNAVRTVKAKLARSRKPLPPTAQTAQNERLMPAMEADDDKGKT*
Ga0070741_1001058210	F013999	AGGAGG	MFTVIGQKRRIQLTRFGRAIGSGIGMLLLASPAFAQIGGDRVSSFLSNSLSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG*
Ga0070741_1001058211	F094175	GGAGG	VIAWSIVMRLIGDHIHRVFLGFMPVSTVMTYGSAAFLIVIIRWAKHGKPRGYLVAWIQHYFRPKAHCARCSASDLPYLVEDEQ*
Ga0070741_1001058216	F052529	GAGG	MRQIAGFALVLVLVGTAGIPCFAQSKPMAAMKQPGGIQPSSANNLGVVPLSYPYSISTEPHFAVFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIIKQIEAPPAKGKTPIETNMLVYMASGRVVNITLKAGKVDNTAYSIDYFLPPAKPLDDPPPVSKEELEKRFQEQERSELAETMVAEVKEHHKSQPGVVAGGLDLRLYSVKRLGVVALVSFDVENTSSETVDLEDPQVNLITASNNPKDRKKPLVKTEPVDIIQSVVSSKQLSPGARAVCMVAFKPPIHDSDQQVVLSISNRAMADKPATYRLE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070741_10010582

Overview

Ecosystem & Geography

Associated Families

Sequences