Scaffold Ga0070741_10000270

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000270
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 197268
• Total Scaffold Genes: 210
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 146 (69.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013688	Metagenome / Metatranscriptome	269	Y
F023626	Metagenome / Metatranscriptome	209	Y
F030270	Metagenome / Metatranscriptome	186	Y
F049127	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000270100	F030270	AGGAG	MTDGHRLEASLLAEIGRRTKEISEMQHELARQQRVLTRAATLLRLGKTAPGVLAEIREQCPDLLQEYCDLHVTVTPPPPLRPVARAAASA*
Ga0070741_10000270154	F013688	N/A	MRCLGRVGLTVALLAALGVAGGWLPGSAVAADSTSASNPTSAAGTIPDLHLSVSELPGETSVRVPLASEGYRLYGLLSPYLSLGSISEIGVPWSASLLPGLQRTTDGLDDVRVGAGMALPLSSRVQLYGEYRFLRGRVDAGTGRGLLQREPDSSDFRAGFSIRLD*
Ga0070741_10000270182	F023626	GAG	MTLILALFGIAAVVFSVLVGVVQTVSTRRQQRHMKRQWEERERLLDRRSVGDPPE*
Ga0070741_1000027069	F049127	N/A	MGIGAAILALLLIATVPALVQAGGASLRGLGWLVVLTAAVVLLIDLTDRLGEWVQRRRWGRRR*