Metagenome / Metatranscriptome Family F049127

Basic Information
Family ID	F049127
Family Type	Metagenome / Metatranscriptome
Number of Sequences	147
Average Sequence Length	66 residues
Representative Sequence	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWGRRR
Number of Associated Samples	124
Number of Associated Scaffolds	147

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	31.97 %
% of genes near scaffold ends (potentially truncated)	24.49 %
% of genes from short scaffolds (< 2000 bps)	69.39 %
Associated GOLD sequencing projects	115
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Bacteria (74.150 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (11.565 % of family members)
Environment Ontology (ENVO)	Unclassified (25.850 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (36.054 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 60.44% β-sheet: 0.00% Coil/Unstructured: 39.56%
Feature Viewer

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Pfam ID	Name	% Frequency in 147 Family Scaffolds
PF03706	LPG_synthase_TM	38.10
PF08281	Sigma70_r4_2	6.12
PF01842	ACT	5.44
PF04542	Sigma70_r2	5.44
PF13490	zf-HC2	4.76
PF03447	NAD_binding_3	4.08
PF04519	Bactofilin	2.04
PF11304	DUF3106	0.68
PF08240	ADH_N	0.68
PF14361	RsbRD_N	0.68
PF01551	Peptidase_M23	0.68
PF01370	Epimerase	0.68
PF13386	DsbD_2	0.68
PF13525	YfiO	0.68

COG ID	Name	Functional Category	% Frequency in 147 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	38.10
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	5.44
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	5.44
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	5.44
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	5.44
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	2.04

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.15 %
Unclassified	root	N/A	25.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.15 %
Unclassified	root	N/A	25.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.15 %
Unclassified	root	N/A	25.85 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	28.57 %
Unclassified	root	N/A	25.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.48 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.68 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	28.57 %
Unclassified	root	N/A	25.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.08 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.36 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.68 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	28.57 %
Unclassified	root	N/A	25.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.08 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.85 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	5.44 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.68 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.44 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.68 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.44 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	0.68 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.44 %
unclassified Massilia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia	0.68 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.44 %
Massilia sp. BSC265	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia → Massilia sp. BSC265	0.68 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_7263321	Not Available	867	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0634772	Not Available	1626	Open in IMG/M
3300001545\|JGI12630J15595_10128859	Not Available	501	Open in IMG/M
3300002245\|JGIcombinedJ26739_100947962	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	744	Open in IMG/M
3300003324\|soilH2_10292325	All Organisms → cellular organisms → Bacteria	3647	Open in IMG/M
3300004114\|Ga0062593_100238568	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300005174\|Ga0066680_10445587	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300005176\|Ga0066679_10131176	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300005328\|Ga0070676_10000600	All Organisms → cellular organisms → Bacteria	17509	Open in IMG/M
3300005329\|Ga0070683_100079136	All Organisms → cellular organisms → Bacteria	3076	Open in IMG/M
3300005331\|Ga0070670_100073308	All Organisms → cellular organisms → Bacteria	2940	Open in IMG/M
3300005332\|Ga0066388_100948837	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300005355\|Ga0070671_100738532	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300005406\|Ga0070703_10009464	All Organisms → cellular organisms → Bacteria	2748	Open in IMG/M
3300005439\|Ga0070711_100050921	All Organisms → cellular organisms → Bacteria	2842	Open in IMG/M
3300005440\|Ga0070705_100523255	Not Available	904	Open in IMG/M
3300005445\|Ga0070708_100135682	All Organisms → cellular organisms → Bacteria	2279	Open in IMG/M
3300005445\|Ga0070708_100566233	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300005467\|Ga0070706_100007620	All Organisms → cellular organisms → Bacteria	10129	Open in IMG/M
3300005467\|Ga0070706_100024380	All Organisms → cellular organisms → Bacteria	5569	Open in IMG/M
3300005467\|Ga0070706_100641000	Not Available	986	Open in IMG/M
3300005529\|Ga0070741_10000270	All Organisms → cellular organisms → Bacteria	197268	Open in IMG/M
3300005536\|Ga0070697_100020471	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5234	Open in IMG/M
3300005536\|Ga0070697_100392470	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300005875\|Ga0075293_1014337	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	946	Open in IMG/M
3300005879\|Ga0075295_1014153	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300005888\|Ga0075289_1042042	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300005937\|Ga0081455_10791196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia → Massilia sp. BSC265	596	Open in IMG/M
3300006047\|Ga0075024_100433782	Not Available	675	Open in IMG/M
3300006176\|Ga0070765_100019245	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	5059	Open in IMG/M
3300006237\|Ga0097621_100237306	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300006755\|Ga0079222_10119378	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300006804\|Ga0079221_10889618	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300006806\|Ga0079220_10150293	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300006845\|Ga0075421_101157829	Not Available	865	Open in IMG/M
3300006854\|Ga0075425_101902717	Not Available	666	Open in IMG/M
3300006904\|Ga0075424_100159680	All Organisms → cellular organisms → Bacteria	2389	Open in IMG/M
3300007255\|Ga0099791_10000359	All Organisms → cellular organisms → Bacteria	16582	Open in IMG/M
3300007788\|Ga0099795_10431988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	603	Open in IMG/M
3300009038\|Ga0099829_10055450	All Organisms → cellular organisms → Bacteria	2952	Open in IMG/M
3300009088\|Ga0099830_10032657	All Organisms → cellular organisms → Bacteria	3533	Open in IMG/M
3300009089\|Ga0099828_10723761	Not Available	893	Open in IMG/M
3300009090\|Ga0099827_10242847	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1511	Open in IMG/M
3300009093\|Ga0105240_11247612	Not Available	786	Open in IMG/M
3300009143\|Ga0099792_10518094	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	749	Open in IMG/M
3300009804\|Ga0105063_1020423	Not Available	786	Open in IMG/M
3300009820\|Ga0105085_1051536	Not Available	748	Open in IMG/M
3300009836\|Ga0105068_1099512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	566	Open in IMG/M
3300010362\|Ga0126377_12888242	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300010400\|Ga0134122_10565909	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1043	Open in IMG/M
3300010400\|Ga0134122_13302008	Not Available	507	Open in IMG/M
3300010401\|Ga0134121_10637187	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300012208\|Ga0137376_10717616	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	862	Open in IMG/M
3300012362\|Ga0137361_10276553	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300012582\|Ga0137358_10092681	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2042	Open in IMG/M
3300012923\|Ga0137359_10362997	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1287	Open in IMG/M
3300012927\|Ga0137416_10585113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	970	Open in IMG/M
3300012927\|Ga0137416_12175355	Not Available	510	Open in IMG/M
3300012931\|Ga0153915_10504311	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300012931\|Ga0153915_12074034	Not Available	665	Open in IMG/M
3300012944\|Ga0137410_10031414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3711	Open in IMG/M
3300012957\|Ga0164303_11249176	Not Available	546	Open in IMG/M
3300012986\|Ga0164304_10024222	All Organisms → cellular organisms → Bacteria → Proteobacteria	2998	Open in IMG/M
3300012987\|Ga0164307_10111477	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1735	Open in IMG/M
3300015245\|Ga0137409_10065796	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3401	Open in IMG/M
3300015371\|Ga0132258_11436776	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300015374\|Ga0132255_102095085	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	862	Open in IMG/M
3300017927\|Ga0187824_10006475	All Organisms → cellular organisms → Bacteria	3293	Open in IMG/M
3300017930\|Ga0187825_10121229	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	913	Open in IMG/M
3300017936\|Ga0187821_10029642	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1929	Open in IMG/M
3300017939\|Ga0187775_10283719	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	647	Open in IMG/M
3300017961\|Ga0187778_10003144	All Organisms → cellular organisms → Bacteria	11136	Open in IMG/M
3300017966\|Ga0187776_10002885	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	8795	Open in IMG/M
3300018031\|Ga0184634_10402035	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	625	Open in IMG/M
3300018063\|Ga0184637_10441360	Not Available	768	Open in IMG/M
3300018079\|Ga0184627_10310767	Not Available	826	Open in IMG/M
3300019458\|Ga0187892_10000213	All Organisms → cellular organisms → Bacteria	154884	Open in IMG/M
3300019885\|Ga0193747_1023436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1524	Open in IMG/M
3300020002\|Ga0193730_1027171	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1657	Open in IMG/M
3300020082\|Ga0206353_11811503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1007	Open in IMG/M
3300020579\|Ga0210407_10103950	All Organisms → cellular organisms → Bacteria	2160	Open in IMG/M
3300020579\|Ga0210407_10455752	Not Available	1000	Open in IMG/M
3300020583\|Ga0210401_11282565	Not Available	591	Open in IMG/M
3300021404\|Ga0210389_11282329	Not Available	562	Open in IMG/M
3300021432\|Ga0210384_10029284	All Organisms → cellular organisms → Bacteria → Proteobacteria	5157	Open in IMG/M
3300021432\|Ga0210384_10095626	All Organisms → cellular organisms → Bacteria	2666	Open in IMG/M
3300021432\|Ga0210384_11348191	Not Available	618	Open in IMG/M
3300021445\|Ga0182009_10008112	All Organisms → cellular organisms → Bacteria → Proteobacteria	3518	Open in IMG/M
3300022756\|Ga0222622_11042942	Not Available	601	Open in IMG/M
3300024224\|Ga0247673_1070545	Not Available	515	Open in IMG/M
3300025898\|Ga0207692_10136022	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300025910\|Ga0207684_10002953	All Organisms → cellular organisms → Bacteria	16854	Open in IMG/M
3300025910\|Ga0207684_10057085	All Organisms → cellular organisms → Bacteria	3312	Open in IMG/M
3300025910\|Ga0207684_10061557	All Organisms → cellular organisms → Bacteria	3187	Open in IMG/M
3300025910\|Ga0207684_10185232	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1795	Open in IMG/M
3300025922\|Ga0207646_10097557	All Organisms → cellular organisms → Bacteria	2633	Open in IMG/M
3300025922\|Ga0207646_10153964	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300025923\|Ga0207681_10117027	All Organisms → cellular organisms → Bacteria	1948	Open in IMG/M
3300025935\|Ga0207709_10459736	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	985	Open in IMG/M
3300025935\|Ga0207709_10792697	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	764	Open in IMG/M
3300026001\|Ga0208000_112057	Not Available	562	Open in IMG/M
3300026011\|Ga0208532_1007616	Not Available	681	Open in IMG/M
3300026015\|Ga0208286_1008162	Not Available	748	Open in IMG/M
3300026088\|Ga0207641_10092930	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2643	Open in IMG/M
3300026333\|Ga0209158_1123047	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	969	Open in IMG/M
3300026340\|Ga0257162_1000387	All Organisms → cellular organisms → Bacteria	4256	Open in IMG/M
3300026482\|Ga0257172_1058340	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	708	Open in IMG/M
3300026508\|Ga0257161_1000612	All Organisms → cellular organisms → Bacteria	8156	Open in IMG/M
3300026515\|Ga0257158_1010959	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300026557\|Ga0179587_10560300	Not Available	751	Open in IMG/M
3300027384\|Ga0209854_1031895	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	880	Open in IMG/M
3300027727\|Ga0209328_10175036	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	650	Open in IMG/M
3300027787\|Ga0209074_10007849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2538	Open in IMG/M
3300027882\|Ga0209590_10254259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1121	Open in IMG/M
3300027915\|Ga0209069_10092625	All Organisms → cellular organisms → Bacteria	1452	Open in IMG/M
3300027950\|Ga0209885_1011503	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300027957\|Ga0209857_1035611	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	907	Open in IMG/M
3300027961\|Ga0209853_1106189	Not Available	708	Open in IMG/M
3300028047\|Ga0209526_10056491	All Organisms → cellular organisms → Bacteria	2764	Open in IMG/M
3300028673\|Ga0257175_1016019	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300028792\|Ga0307504_10140965	Not Available	809	Open in IMG/M
3300028792\|Ga0307504_10170935	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	752	Open in IMG/M
3300028792\|Ga0307504_10344886	Not Available	572	Open in IMG/M
3300028812\|Ga0247825_10630663	Not Available	769	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10145864	Not Available	649	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10195382	Not Available	565	Open in IMG/M
3300031716\|Ga0310813_10494123	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1068	Open in IMG/M
3300031720\|Ga0307469_10108713	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1971	Open in IMG/M
3300031720\|Ga0307469_11129837	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	737	Open in IMG/M
3300031740\|Ga0307468_101177199	Not Available	689	Open in IMG/M
3300031820\|Ga0307473_10029495	All Organisms → cellular organisms → Bacteria	2369	Open in IMG/M
3300031820\|Ga0307473_10189266	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1211	Open in IMG/M
3300031944\|Ga0310884_10946011	Not Available	533	Open in IMG/M
3300031949\|Ga0214473_10023663	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7187	Open in IMG/M
3300031962\|Ga0307479_10090781	All Organisms → cellular organisms → Bacteria	2962	Open in IMG/M
3300032174\|Ga0307470_11162120	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
3300032174\|Ga0307470_11679143	Not Available	534	Open in IMG/M
3300032180\|Ga0307471_100474140	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1395	Open in IMG/M
3300032180\|Ga0307471_100840386	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300032205\|Ga0307472_101141553	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	740	Open in IMG/M
3300033412\|Ga0310810_10204391	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2227	Open in IMG/M
3300033433\|Ga0326726_10025048	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5187	Open in IMG/M
3300033480\|Ga0316620_10045623	All Organisms → cellular organisms → Bacteria	2948	Open in IMG/M
3300033513\|Ga0316628_100596276	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1439	Open in IMG/M
3300034090\|Ga0326723_0036688	All Organisms → cellular organisms → Bacteria	2049	Open in IMG/M
3300034090\|Ga0326723_0534376	Not Available	540	Open in IMG/M
3300034817\|Ga0373948_0222178	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.44%
Host-Associated	Host-Associated	11.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.95%
Plants	Host-Associated → Plants	11.56%
Aquatic	Environmental → Aquatic	7.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.48%
Sediment	Environmental → Aquatic → Sediment	4.08%
Freshwater	Environmental → Aquatic → Freshwater	3.40%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.40%
Peat	Environmental → Terrestrial → Peat	2.04%
Cave	Environmental → Terrestrial → Cave	0.68%
Roots	Host-Associated → Plants → Roots	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.30%
Loam	Environmental → Terrestrial → Soil → Loam	16.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.48%
Sand	Environmental → Terrestrial → Soil → Sand	6.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.08%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.40%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.36%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.13%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.24%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.48%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.08%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.04%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.36%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.68%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.68%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.68%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.80%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	4.76%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	4.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.04%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.04%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.04%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.04%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.04%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.04%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.36%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.36%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.36%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.68%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.68%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.68%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.68%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.68%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026001	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104 (SPAdes)	Environmental	Open in IMG/M
3300026011	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301 (SPAdes)	Environmental	Open in IMG/M
3300026015	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300027950	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0900.00001240	2162886012	Miscanthus Rhizosphere	MGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR
ICChiseqgaiiDRAFT_06347724	3300000033	Soil	VGLSNLRRMGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR*
JGI12630J15595_101288592	3300001545	Forest Soil	MWIGAAGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR*
JGIcombinedJ26739_1009479622	3300002245	Forest Soil	MWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR*
soilH2_102923254	3300003324	Sugarcane Root And Bulk Soil	MGIGAAILALLLVATIPALVQDGGSVLRGLGWLAVVAAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0062593_1002385683	3300004114	Soil	RMGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0066680_104455872	3300005174	Soil	LAFEGVALYADGMWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAALLLIDLADRLTEWVERRRWGRRR*
Ga0066679_101311762	3300005176	Soil	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWRRRR*
Ga0070676_1000060018	3300005328	Miscanthus Rhizosphere	MGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0070683_1000791364	3300005329	Corn Rhizosphere	VGLSNLKRMGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0070670_1000733082	3300005331	Switchgrass Rhizosphere	MGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVLAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0066388_1009488372	3300005332	Tropical Forest Soil	LLGVLALLLIVTVPALIMAGGTTLRGLGWLVVVGGLVVLLIDATDRITEWVERRRWGRRR
Ga0070671_1007385322	3300005355	Switchgrass Rhizosphere	VGLSTLGRMGIGAGILALLLIATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0070703_100094641	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	KRMGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0070711_1000509211	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWGRRR*
Ga0070705_1005232552	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRFGLGVLALLVAATVPALIVAGGTTLRGLGWLLLIGVAVVLLIDFTDRVTDWIERRRWGRRR*
Ga0070708_1001356822	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VFRWVALYAGGMWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAAVLLVDLTDRLTEWVERRRWRRRR*
Ga0070708_1005662332	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LAFRGLALYAGGMWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR*
Ga0070706_1000076206	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGALVLLIDLTDRLTEWVERRRWRRRR*
Ga0070706_1000243801	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRFGLGVLALLVAATVPALIVAGGTTLRGLGWLLLIGVAVVLLIDFTDRVTDWIERRRWGRR
Ga0070706_1006410002	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAALLLIDLADRLTEWVERRRWGRRR*
Ga0070741_1000027069	3300005529	Surface Soil	MGIGAAILALLLIATVPALVQAGGASLRGLGWLVVLTAAVVLLIDLTDRLGEWVQRRRWGRRR*
Ga0070697_1000204718	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTHARQFFLVFGEVALYARGMWIRAAVLALLVVAAVPAFIEAGAPSLRGLGWLVVVVGATVLLVDLTDRLTEWVERRRW
Ga0070697_1003924701	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	AVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR*
Ga0075293_10143372	3300005875	Rice Paddy Soil	MRFGMAVLAVLLVALVPVLVLAGAPSLRGLGWMLVVGGAVVLLVDLTDRLIEWVERRRWGRRP*
Ga0075295_10141532	3300005879	Rice Paddy Soil	VTLARQFFLVFGGVALYALGMWIGAAVLALLVVAAVPAFIEAGAPSLRGLGWLVVVVGATVLLVDLTDRLTEWVERRRWGRRR*
Ga0075289_10420421	3300005888	Rice Paddy Soil	MWIRAAVLALLVVAAVPAFIEAGAPSLRGLGWLVVVVGATVLLVDLTDRLTEWVERRRWGRRR*
Ga0081455_107911961	3300005937	Tabebuia Heterophylla Rhizosphere	MRFGVGVLALLIAASVPALIVAGGMTLRGLAWFVLIGAAVVLLIDLSDRITDWIERRRRGR*
Ga0075024_1004337822	3300006047	Watersheds	MWIGAAVLTILVVAAVPAFVEAGGSSLRGLGWLIVATGAAVLLIDLTDRLTDWVERRRWGRRR*
Ga0070765_1000192452	3300006176	Soil	MRYVLSMLALLVIAIVPALFLVGPSTSLRGVGWLIVLAGALVVLIDLTDRLAEWVERRRWGRRR*
Ga0097621_1002373063	3300006237	Miscanthus Rhizosphere	VGLSNLRRMGIGAGILALLLIATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0079222_101193782	3300006755	Agricultural Soil	MWIGAAVLALLVVAAVPALIEAGSSSLRGLGWLIAATGALVLLIDLTDRLTEWVERRRWGRRR*
Ga0079221_108896182	3300006804	Agricultural Soil	LRFRGWALYAVGMWIGAAVLALLVVAAVPALIEAGSSSLRGLGWLIAATGALVLLIDLTDRLTEWVERRRWGRRR*
Ga0079220_101502931	3300006806	Agricultural Soil	MWIGAAVLALLMVAALPALIEAGTPSLRGLAWLVVIVGATVLLIDLTDRLTE
Ga0075421_1011578292	3300006845	Populus Rhizosphere	VGLSTLGRMGIGAGILALLLIATVPALIEAGGSSLRGLGWLVVVLAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0075425_1019027172	3300006854	Populus Rhizosphere	MWIGAGVLALLVVAAVPAFIEAGGSSLRGLGWLIVAVGAAVLLIDLTDRFTEWVERRRWGRRR*
Ga0075424_1001596802	3300006904	Populus Rhizosphere	MGIGAGILALLLIATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0099791_1000035916	3300007255	Vadose Zone Soil	MWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR*
Ga0099795_104319881	3300007788	Vadose Zone Soil	GAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWRRRR
Ga0099829_100554502	3300009038	Vadose Zone Soil	LAFEGVALYADGMWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAALLLIDLTDRLTEWVERRRWGRRR*
Ga0099830_100326573	3300009088	Vadose Zone Soil	MWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAALLLIDLTDRLTEWVERRRWGRRR*
Ga0099828_107237612	3300009089	Vadose Zone Soil	MRFGLAVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAIVLLIDFTDRVTDWIERRRWGRRR*
Ga0099827_102428472	3300009090	Vadose Zone Soil	MRFGIGVLALLVAATVPALIVAGSTSLRGLGWVLLIGAAVVLLIDFTDRVTDWIERRRRGR*
Ga0105240_112476121	3300009093	Corn Rhizosphere	MGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRW
Ga0099792_105180942	3300009143	Vadose Zone Soil	FFLAFRGVALYAGGMWIGAAVLAILLVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR*
Ga0105063_10204231	3300009804	Groundwater Sand	MRFGLGVLALLVAATVPALIVAGGTTLRGLGWLLLIGAAVVLLIDFSDRVTDWIERRRRGR*
Ga0105085_10515362	3300009820	Groundwater Sand	MRFGLGVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAVVLLIDFSDRVTDWI
Ga0105068_10995122	3300009836	Groundwater Sand	MRFGVGVLALLVAATVPALIVAGGTTLRGLGWLLLIGAAVVLLIDFSDRVTDWLERRRWGRRR*
Ga0126377_128882422	3300010362	Tropical Forest Soil	MGIGAAILALLLIATVPALVQAGGSSLRGLGWLVVVTAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0134122_105659091	3300010400	Terrestrial Soil	LLGVPGVALYAGGMWIGATVLAILVVVAVPAFIEAGGSSLRGLGWLIVAAASAVLLIDLTDRFGEWVKRRRWGRRR*
Ga0134122_133020082	3300010400	Terrestrial Soil	MWIGAAVLAILVVAAVPALIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWRRRR*
Ga0134121_106371872	3300010401	Terrestrial Soil	MWVGAAVLTILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLADRLTEWVERRRWGRRR*
Ga0137376_107176161	3300012208	Vadose Zone Soil	MWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVATGALVLLIDLTDRLTEWVERRRWGRRR*
Ga0137361_102765532	3300012362	Vadose Zone Soil	MWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRFTEWVERRRWGRRR*
Ga0137358_100926811	3300012582	Vadose Zone Soil	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRFTEWVERRRWGRRR*
Ga0137359_103629972	3300012923	Vadose Zone Soil	MWIGAAVLAILLVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRFTEWVERRRWGRRR*
Ga0137416_105851131	3300012927	Vadose Zone Soil	FFLAFRGWLSKLAGMWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRFTEWVERRRWGRRR*
Ga0137416_121753552	3300012927	Vadose Zone Soil	MWIGAAALAILVVAAVPAFIEAGGSSLRGLGWLIVATGAALLLIDLTDRLTEWVERRRWGRRR*
Ga0153915_105043113	3300012931	Freshwater Wetlands	MWIRAAVLALLVVAAVPAFVGAGTASLRGLGWVVVLVGATVLLIDLTDRLTEWVERRRWGRRR*
Ga0153915_120740342	3300012931	Freshwater Wetlands	LVFGGVALYAGGMWIGAAVLALLVVAALPAFIEAGTPILRGLGWLVVLVGATVLLIDLADRLTEWVERRRWGRRR*
Ga0137410_100314147	3300012944	Vadose Zone Soil	MWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWV
Ga0164303_112491762	3300012957	Soil	VALYAGGLVVGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRFTEWVERRRWGRRR*
Ga0164304_100242223	3300012986	Soil	MGIGAGILALLLIATVPALIEAGGSSLRGLGWLVVVLAAVVLLIDLTDRLGEWVERRRWGRRR*
Ga0164307_101114771	3300012987	Soil	MGIGAGILALLLIATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEW
Ga0137409_100657967	3300015245	Vadose Zone Soil	MWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERR
Ga0132258_114367762	3300015371	Arabidopsis Rhizosphere	MWIGAAILALLVVAALPALIEAGATSLRGLAWLVVVVGATVLLIDLTDRLTEWVERRRWGRRR*
Ga0132255_1020950852	3300015374	Arabidopsis Rhizosphere	MWIGAAILALLVVAALPALIEAGATSLRGLGWLLVIVGATVLLIDLTDRLTEWVERRRWGRRR*
Ga0187824_100064754	3300017927	Freshwater Sediment	MWIGAAVLALLMVAALPALIEAGTPSLRGLAWLVVIVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0187825_101212292	3300017930	Freshwater Sediment	MWIGAALLALLVVAALPALVEAGTPSLRGLGWLVVILGATVLLIDLSDRLTEWVERRRWGRRR
Ga0187821_100296423	3300017936	Freshwater Sediment	VFGGVALYALGMWIGAAVLALLVVAALPALIEAGTPSLRGLGWLVVVVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0187775_102837192	3300017939	Tropical Peatland	FGVAMIPTLFLAGETSLRELGWLVVAAAAVVLLIDLTDRLIEWVEARRWGRRR
Ga0187778_1000314410	3300017961	Tropical Peatland	MGYALAVLTLLLIATVPVLLLAGPSSSLRGLGWLVVLAGGLVLLIDMTDRLAEWIERRRWRGRR
Ga0187776_1000288512	3300017966	Tropical Peatland	MRFAIALLILFGVAMIPTLFLAGGTSLRELGWLAVAAAAVVLLIDLTDRLIEWVEARRWGRRR
Ga0184634_104020351	3300018031	Groundwater Sediment	MRFGLGVLALLVAATVPAFIVAGGTTLRGLAWLLVIGAAVVLLIDFTDRVTDWIERRRWGRRR
Ga0184637_104413602	3300018063	Groundwater Sediment	MRFGLGVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAVVLLIDFSDRVTDWIERRRWGRRR
Ga0184627_103107671	3300018079	Groundwater Sediment	MRFGLGVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAVVLLIDFSDRVTDWVERRRWGRRR
Ga0187892_1000021344	3300019458	Bio-Ooze	MRFGVGVLALLVVAAVPALIVAGGTTLRGLGWLLLIGAAVVLLIDFTDRVTDWIERRRRG
Ga0193747_10234361	3300019885	Soil	LAILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0193730_10271713	3300020002	Soil	RSGGWLSTLAGMWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0206353_118115032	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VGLSNLKRMGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR
Ga0210407_101039501	3300020579	Soil	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWR
Ga0210407_104557521	3300020579	Soil	MRYVLSMLALLVIAVVPALFLAGPSTSLRGVGWLIVLAGALVVVIDLTDRLAEWVERRRWGRRR
Ga0210401_112825651	3300020583	Soil	MRYVLSMLALLVIAIVPALFLVGPSTSLRGVGWLIVLAGALVVLIDLTDRLAEWVERRRWGRRR
Ga0210389_112823292	3300021404	Soil	MLIGSAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWRRRR
Ga0210384_100292841	3300021432	Soil	AVYTVRPGTQSSCGFGGGLSTLLAMWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWRRRR
Ga0210384_100956266	3300021432	Soil	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIAAAGAAVLLIDLTDRLTEWVERRRWRRRR
Ga0210384_113481911	3300021432	Soil	MWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRFTEWVERRRWG
Ga0182009_100081127	3300021445	Soil	VGLSNLRRMGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR
Ga0222622_110429421	3300022756	Groundwater Sediment	VARARVYIRSFFLAFRGVALYAGGMWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVVTGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0247673_10705452	3300024224	Soil	MRHPALILLGVPGVALYAGGMWIGATVLAILVVVAVPAFIEAGGSSLRGLGWLIVAAASAVLLIDLTDRFGEWVKRRRWGRRR
Ga0207692_101360223	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWVIGAAGALVLLIDLTDRLTEWVERRRWGRRR
Ga0207684_1000295310	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRFGLGVLALLVAATVPALIVAGGTTLRGLGWLLLIGVAVVLLIDFTDRVTDWIERRRWGRRR
Ga0207684_100570853	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VFRWVALYAGGMWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAAVLLVDLTDRLTEWVERRRWRRRR
Ga0207684_100615573	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LAFRGWAPYAVGMWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGALVLLIDLTDRLTEWVERRRWRRRR
Ga0207684_101852322	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LAFRGLALYAGGMWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0207646_100975576	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGALVLLIDLTDRLTEWVERRRWRRRR
Ga0207646_101539644	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAAVLLVDLTDRLTEWVERRRWRRRR
Ga0207681_101170271	3300025923	Switchgrass Rhizosphere	GLSNLKRMGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR
Ga0207709_104597362	3300025935	Miscanthus Rhizosphere	LYARGMWIRAAVLALLVVAAVPAFIEAGAPSLRGLGWLVVVVGATVLLVDLTDRLTEWVERRRWGRRR
Ga0207709_107926971	3300025935	Miscanthus Rhizosphere	SNLRRMGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR
Ga0208000_1120572	3300026001	Rice Paddy Soil	MRFGMAVLAVLLVALVPVFVLAGAPSLRGLGWMLVVGGAVVLLVDLTDRLIEWVERRRWGRRP
Ga0208532_10076162	3300026011	Rice Paddy Soil	VTLARQFFLVFGGVALYALGMWIGAAVLALLVVAAVPAFIEAGAPSLRGLGWLVVVVGATVLLVDLTDRLTEWVERRRWGRRR
Ga0208286_10081622	3300026015	Rice Paddy Soil	MRFGMAVLAVLLVALVPVLVLAGAPSLRGLGWMLVVGGAVVLLVDLTDRLIEWVERRRWGRRP
Ga0207641_100929303	3300026088	Switchgrass Rhizosphere	VGLSNLKRMGIGAGILALLLVATVPALIEAGGSSLRGIGWLVVVIAAVVLLIDLTDRLGEWVERRRWGRRR
Ga0209158_11230471	3300026333	Soil	DGMWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAALLLIDLADRLTEWVERRRWGRRR
Ga0257162_10003874	3300026340	Soil	MWIGAAVLTILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0257172_10583402	3300026482	Soil	SMWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0257161_10006125	3300026508	Soil	VARARVYIRLFFLAFRGVALYAGGMWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0257158_10109593	3300026515	Soil	MWVGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0179587_105603002	3300026557	Vadose Zone Soil	LAFRGVALYAGGMWIGAAVLAILVVAAVQAIIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0209854_10318952	3300027384	Groundwater Sand	VMRFGLGVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAVVLLIDFSDRVTDWIERRRR
Ga0209328_101750362	3300027727	Forest Soil	WIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0209074_100078494	3300027787	Agricultural Soil	MWIGAAVLALLVVAAVPALIEAGSSSLRGLGWLIAATGALVLLIDLTDRLTEWVERRRWGRRR
Ga0209590_102542591	3300027882	Vadose Zone Soil	MRFGIGVLALLVAATVPALIVAGSTSLRGLGWVLLIGAAVVLLIDFTDRVTDWIERRRRG
Ga0209069_100926252	3300027915	Watersheds	MWIGAAVLTILVVAAVPAFVEAGGSSLRGLGWLIVATGAAVLLIDLTDRLTDWVERRRWGRRR
Ga0209885_10115032	3300027950	Groundwater Sand	MRFGLGVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAVVLLIDFSDRVTDWIERRRRR
Ga0209857_10356112	3300027957	Groundwater Sand	MRFGVGVLALLVAATVPALIVAGGTTLRGLGWLLLIGAAVVLLIDFSDRVTDWLERRRWGRRR
Ga0209853_11061892	3300027961	Groundwater Sand	MRFGVGVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAVVLLIDFSDRVTDWIERRRRR
Ga0209526_100564912	3300028047	Forest Soil	MWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0257175_10160191	3300028673	Soil	LAFEGVALYADGMWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATGAALLLIDLTDRLTEWVERRRWGRRR
Ga0307504_101409651	3300028792	Soil	MWIGAAVLTILVVAAVPAFIEAGGASLRGLGWLIVATGAVVLLIDVTDRLTEWVERRRWGRRR
Ga0307504_101709351	3300028792	Soil	MRFGMGVLALLVAATVPALILAGSTSLRGLAWLVVVAGAVVLLIDFTDRVTDWIERRRWGRRR
Ga0307504_103448861	3300028792	Soil	MRFGLGVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAVVLLIDFTDRV
Ga0247825_106306632	3300028812	Soil	MGIGAGILALLLVATVPALIEAGGSSLRGLGWLVVVIAAVVLLIDLTDRLGEWVERRR
(restricted) Ga0255310_101458642	3300031197	Sandy Soil	MRFGLGVLALLVAATVPALIVAGGTSLRGLGWLLLIGAAVVLLIDFTDRVTDWIERRRRG
(restricted) Ga0255310_101953822	3300031197	Sandy Soil	MWIGAAVLALLVVAALPALIEAGTPSLRGLGWLVVVVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0310813_104941232	3300031716	Soil	RARQFFLVFGGVALYALGMWFGAAILALLVVAALPALIEAGTPSLRGLGWLVVVVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0307469_101087133	3300031720	Hardwood Forest Soil	MRYVLSMLALLVIAIVPALFLVGPSTSLRGLGWLIVLAGALVVLIDLTDRLAEWVERRRWGRRR
Ga0307469_111298372	3300031720	Hardwood Forest Soil	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIAAAGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0307468_1011771992	3300031740	Hardwood Forest Soil	MWIGAAVLAILVVAAVPAFIEAGGSSLRGLGWLIVATRAAVLLVDQTDRLTEWVERRRWGRRR
Ga0307473_100294953	3300031820	Hardwood Forest Soil	LAFRGWAPYAVGMWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGVAVLLIDLTDRLTEWVERRRWRRRR
Ga0307473_101892661	3300031820	Hardwood Forest Soil	AFRGLALYAGGMWIGAAVLAILVVAAVPAFIEAGGASLRGLGWLIVAIGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0310884_109460112	3300031944	Soil	RVPVYMRHPALILLGVPGVALYAGGMWIGATVLAILVVVAVPAFIEAGGSSLRGLGWLIVAAASAVLLIDLTDRFGEWVKRRRWGRRR
Ga0214473_100236636	3300031949	Soil	MRFGIGVLALLVAATIPALIVAGSTSLRGLGWLVLIGAAVVLLIDFTDRVTDWIERRRRG
Ga0307479_100907813	3300031962	Hardwood Forest Soil	LAFRGGAPYAVGMWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGVAVLLIDLTDRLTEWVERRRWRRRR
Ga0307470_111621201	3300032174	Hardwood Forest Soil	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWVIVAAGALVLLIDLTDRLTEWVERRRWGRRR
Ga0307470_116791431	3300032174	Hardwood Forest Soil	MWVGAAVLTILVVAAVPAFIEAGGASLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWGRRR
Ga0307471_1004741402	3300032180	Hardwood Forest Soil	LRFRGWALYAVGMWIGAAVLALLLVAAVPAFIEAGGSSLRGLGWLIVATGAAVLLIDLTDRLTEWVERRRWRRRR
Ga0307471_1008403861	3300032180	Hardwood Forest Soil	MWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGVAVLLIDLTDRLTEWVERRRWR
Ga0307472_1011415531	3300032205	Hardwood Forest Soil	MFLLFRGWALYAVGMWIGAAVLALLVVAAVPAFIEAGGSSLRGLGWLIVAAGAAVLLIDLTDRLTEWVERRRWRRRR
Ga0310810_102043913	3300033412	Soil	MWFGAAILALLVVAALPALIEAGTPSLRGLGWLVVVVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0326726_100250486	3300033433	Peat Soil	MWIGAAVLALLVVAALPALIEAGTPSLRGLAWLVVVVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0316620_100456233	3300033480	Soil	MWIRAAVLALLVVAAVPAFVGAGTASLRGLGWVVVLVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0316628_1005962762	3300033513	Soil	LEFGGVALYALGMWIGAAVLALLVVAAVPAFIEAGAPSLRGIGWLVVVVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0326723_0036688_1435_1626	3300034090	Peat Soil	MWIGAAVLALLVVAALPAFIEAGTPILRGLGWLVVLVGATVLLIDLADRLTEWVERRRWGRRR
Ga0326723_0534376_40_291	3300034090	Peat Soil	LTRVRQFFLVFGGVALYALGMWIGAAVLALLLVAALPALIEAGTPSLRGLAWLVVVVGATVLLIDLTDRLTEWVERRRWGRRR
Ga0373948_0222178_334_492	3300034817	Rhizosphere Soil	VVVAVPAFIEAGGSSLRGLGWLIVAAASAVLLIDLTDRFGEWVKRRRWGRRR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters