Scaffold Ga0070741_10000221

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000221
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 216785
• Total Scaffold Genes: 247
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 159 (64.37%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002755	Metagenome / Metatranscriptome	532	Y
F002992	Metagenome / Metatranscriptome	515	Y
F003246	Metagenome / Metatranscriptome	498	Y
F004652	Metagenome / Metatranscriptome	429	Y
F004844	Metagenome / Metatranscriptome	421	Y
F022478	Metagenome / Metatranscriptome	214	Y
F026338	Metagenome / Metatranscriptome	198	Y
F039734	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000221109	F002992	N/A	VSLRSAPVVEQASLPEGGGVSVWVGVPDDPYIERSELTTVDVQLRRGEAVLASISTVLDPDQTSEARQLALEVKAALEAGEIGLHADDLEPFADRLR*
Ga0070741_10000221151	F004844	GGA	MPTMSRPGERISVFLFAVLLLALFVALTFAAGYGLGKILL*
Ga0070741_10000221172	F004652	AGG	MSETIQIDIPRRGIGSDLREALAACGMHAEIVDADDECALQVRFAEEEHDRLLNGAIAAIESYLSERMLPLVVQRADGRAVVRPPGD*
Ga0070741_10000221180	F003246	GAG	VISTRQTMRAGEAVAGLLAAAALFLGALQLFYRPFRLAPAALVLLLVATVMSREQHGLIRLAFAVVGICFVAGAALQVVTHHPLF*
Ga0070741_10000221194	F026338	N/A	VNWRSKRSVVLLVAAVCAVVFAAGMAAAWHNRHETICRDGRPPASQRGGLLGQIVYRCHDGQLVTTPG*
Ga0070741_10000221221	F039734	N/A	MELNLLAPVRHWEARRALKVARRRADAELLASRLPSPRLAWRSAELVAAGNRVSLARSVTDVVHAADERLLLGASPLHRATVRDCRSELLALASRLCDVASPVAPRGVLLVERLLVDGESPLYGDGGVDRLRAEVARCDEELTARRGAD*
Ga0070741_10000221223	F022478	N/A	VRNRVLVYTEALDVAAEGAVWYARRIGGGTFEALHVPGRRTDTGIHARWFDFTGGEPRLDVREPGSDATAAVLGEIERLRSESDDTIVTVVLPEQFARRSLLAAAQREQFRLKLRLLVEPRVVVADVPTVTPKRRPEGRVPQRLVVRVLAGDDDGATRRAVAYAGMLGGDDVRAVHFGTRDWEEGLALAVDDAPLDGRLGDALLAYLRGLTAEPSSVVNVVLPERIHPSLRWLRSRRALAIKRLLLFEPHVILSSVPCRD*
Ga0070741_1000022146	F002755	AGGAGG	MPPRKVVTGVLLAAGSLAGSVLWRRRAARKRERVDLYAEDGSVHSYVEGSDEATGLLAIAHELLSPA*