Scaffold Ga0070741

Basic Information
Taxon OID	3300005529 Open in IMG/M
Scaffold ID	Ga0070741_10000003 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	888389
Total Scaffold Genes	834 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	529 (63.43%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

888389

Total Scaffold Genes

834 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

529 (63.43%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001208	Metagenome / Metatranscriptome	747	Y
F001675	Metagenome / Metatranscriptome	654	Y
F002416	Metagenome	561	Y
F003513	Metagenome / Metatranscriptome	482	Y
F006673	Metagenome / Metatranscriptome	367	Y
F009773	Metagenome	313	Y
F011026	Metagenome	296	Y
F013685	Metagenome	269	Y
F024072	Metagenome / Metatranscriptome	207	Y
F035446	Metagenome	172	Y
F055129	Metagenome	139	N
F077116	Metagenome / Metatranscriptome	117	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000003161	F006673	GAG	VLLLFGCLAPLLLNLAGHTQTPQAARGVIRLKVRYKSAAGMKDLPRKRFFLIKGSLEQNQALTDTIKQTQFTSRQCYYRSHGASDALLKWLDEKDCESIYCHEIEDKYISGSEAVPEFKAAYDQALKELKTPEVARRWLPNYLPAELRDGYYKTRQQTIDALTKQAETATGKPVMSIMTDRKGTAYLTDLDPGVYTISNLVGSETEKSSILWICEREVKATDLYIAMKRPFMLSNEKDPKVKCEVIERPLPACK*
Ga0070741_10000003220	F024072	GAG	MKRKGIIIGGVLAAIVLVAFYYFYWGSTVPNGQQPLVRLTGSNISSLKDAFNGSANSVRLVVMLSPT*
Ga0070741_10000003351	F035446	GGAGG	MKSRERGNIWPMISVAGGALFMLVIVPLMLHRERSARLATVEPQVSIGDGGSDLIRGREVPMYRWPDSEVPRTADRLRDVTAVAIAAITYVTEGAIKGRAPRDVAEIVSGIGERQLIPPEWLTSQPGVLQIPRGTIHIRYLPGDLAVEVISVPNDRRDGPAILIRIPDRENVAVGARYFESMQLDGIVYPNPFAPIAEIIAAGWQPRLFKQSQMPDEQRAQLEQWIQTAIRK*
Ga0070741_10000003357	F002416	GGAGG	MSFIEIPNVPGLENSRAALIGRKLLALAFGMKALSAPVAAALLLLLGVVSATAQTPSGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAYGIVTSGLRESLSTWKFITGAACFAFGGVCAAIYAFSQGDTVPLDNQF*
Ga0070741_10000003358	F009773	AGGAG	VRARPVRPNIYLPVVRFGVADSDWFSVLLISCAGYLLPVPFGITVLYVPLQMWTWLIATAGSIAFFNYIRIGKRPHWLQHKLRTILFHHRQYRSIPNGKKQSFSRAWLIDSNQVSANQSNGEQFRSRWRTAALLAHNTQIQEGCEPRCNELVSTN*
Ga0070741_10000003360	F013685	GAG	MSLKQIIKHLLLGILIGTILSPSTAQAQWTVFDPAQYSLQIERQIEEANRWLERVKHYSDEINKLAEQLSTMKGVLGQAEKLVLHNDNLTRAMAQIGQTVRDVFQLKRAIETMVISRLNMIKSMKTRLMSGIFDPDADLRDFEDYLRNSIGRQEEDKIATMNRIAMFDATLARLYHDLQTAQARQAGAAAQMKQAKDKLDEELAKPQTEQCAHCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVKATDEAWDNLKIVKDDIFAAIEQGGVPRPSPTP*
Ga0070741_10000003420	F001208	AGG	MIEERKNTTFEIRVSEGKAGTNPESPDWEVAELENGRVVDNSDIYDNLTYAEAQQIAGMWTKKKEEAEAAVE*
Ga0070741_10000003442	F011026	GGA	MKLRFTHLIIIGLLCCATASAQESATRGRRATNAPTGEATITVSEQFLNSFLTAIFENLNEPSMPLTVGGAKSGPACASEIRLKREAAGVRTAVHFENGRITGPLAFAGAYNSGLMGCIEFSGWADAEVVLDFDKPRQALVARFRLRDIHLNNTPAVLNGPLLSMVQSTIDQKYNPVELFTLEKLSTRVDIQPAGGALQLRAREIRPEITPSALTLHIIYEFTRG*
Ga0070741_10000003617	F003513	AGGAGG	MLRKHSMKKALLVLGCLALIGLAIAATPPPNSAAEFSGREILSVSRIAHGGPDYANLQYVTVKAGGFVNAVAFGGMGANPLGGMAEVKLNITDYQDKQLRRRLEVAPTATLPGRTYLVFTGSTGGGMIFGNEFRVREAAASRHWGMMGFDTLNRAIEGSLVSARQADEGNDYVVEVKFNADDTVRYWINKQSFLIDKITTRYRSQVLIEEQRSNYRRADCMMLPFHIITRLQGQPLADLDIVSYDLKSTVPAATFTLTATP*
Ga0070741_1000000362	F055129	AGGGGG	MAVVLTDIQIAFAAGALFADAGAPVIEAARKESAAALAKIYSSYMLRSLVYAGVFLGPVATISLLAYPAWETQYVSGIFDNTVAYNETTNFPWNAYPYGIFLMVVSLGGWFGNWLGFKWVLNGARKKLRILYLVIVAITFAVVWIRYPAPTQVCDYAHFKAAPFALPCRNYIAHRPFFYNFIVLLLLAGLPLLIGFIQVRMSVKKLKH*
Ga0070741_10000003705	F001675	N/A	MWDTKRQIIWLVAGISFGTFIVFMDAHNEVGQFEPAVFVFWEIILLAIIVTLFWLYSRKNT*
Ga0070741_10000003789	F077116	GAGG	MNVEITDDERDFLKEVFEEKQKHMIQEINHTDTIDFERMLKQKLDVLEGLMRKIGVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070741_10000003

Overview

Ecosystem & Geography

Associated Families

Sequences