Scaffold Ga0068872_10074148

Overview

Basic Information

• Taxon OID: 3300005528
• Scaffold ID: Ga0068872_10074148
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2074
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020684	Metagenome	222	Y
F026830	Metagenome / Metatranscriptome	196	Y
F040531	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068872_100741481	F040531	AGG	MPAQDWSRVSKASKRKHSVDATSIPIGTIVSYYGGEVREGKSA
Ga0068872_100741482	F026830	N/A	MDKGETIMPVPGGEITTTEILVPVVEEVVEDSTTEEDEDDLPELS*
Ga0068872_100741484	F020684	AGGA	MSKYALTIEEEATCVEVGYQRQKPYFGDPTKNINYSEGDLWETWQHVVCAGSELAFARMVGKNDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSTRDDDNLVYVLMSDGLCHKTRRNAPDWKGPEYTAIGWKLGSECKRDEWKYNDRTWYVPVIYLNSMESLILNG*