Scaffold Ga0068876_10038635

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10038635
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2950
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006653	Metagenome / Metatranscriptome	367	Y
F009331	Metagenome / Metatranscriptome	319	Y
F026830	Metagenome / Metatranscriptome	196	Y
F028460	Metagenome / Metatranscriptome	191	Y
F064505	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100386351	F028460	N/A	VMVLHHVSEQSEYGSPSNPPHRRAIHGKVSQLPALILTLGYDPSQGMLKVAPVKNRFGEHTADGSNYAQLLVNYAAVQISDQNEFGWMLRRDTIAGYQGGYNV*
Ga0068876_1003863510	F064505	N/A	MVSGLVTELHPVIYDLVPSVANTIHRRYNKHVEKDDIKQELMAWAMTRVEDHIIDLMEPNEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMIRDGQPKGSSSPAEGG
Ga0068876_100386352	F006653	AGGAGG	MSEQQLSNKYRDNLKVDALRADVDALKVDLTNFVGALLQSGIVELVKDEEGNIVYKINKVVLVDESVQQD*
Ga0068876_100386354	F026830	AGGAG	MPVPEGNITTSDILVPVVEEVVEVSTTEEENTDGKVEE*
Ga0068876_100386356	F009331	AGAAGG	MICQNCLKAGAENRDNHFKRATAWHNKCDFKGCVCQHKIGPGYVKRDGSKVPLMQTQSP*