Scaffold Ga0068876_10036876

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10036876
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3027
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F019438	Metagenome	229	Y
F021243	Metagenome	219	Y
F022835	Metagenome	212	Y
F042869	Metagenome	157	Y
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1003687613	F022835	N/A	LEEARRQVEVAMLNADMESIKEDADTRSELKSKVDAIINKFEW*
Ga0068876_100368764	F021243	AGGAG	MKDPEDEAFEELALKQGQWNHISGWRKRQIERDFAAIDDANNIRKKQIAHMDMHSHPAEFVHLHRNDTIEEVAKELETKFTGPFGRDTVQSFATFVRSMKK*
Ga0068876_100368765	F093280	AGGAG	MSPKIEALIKATGCADVGELFDRSIRLGQVLHQFKQEHGRIMNATELRYLEAVVHATPQERT*
Ga0068876_100368766	F011292	AGGAG	MTPRSFDIDTCKEVVGDARMRVIEAKARQDADNGVMDAPAMAKGTYWDGAYSYMEYVVYVTAHEKRLARIQRMKERA*
Ga0068876_100368768	F042869	AGGGGG	MNKLIGKDDTIKNYVPIGSLELKLAVARAEGYAIRVDETRYHHVVDGTVVTSVDESKPKYYYYNDRPLPMLNPYRIAMEFYLKEKT*
Ga0068876_100368769	F019438	GGAGG	METIVTTILLGGLGFIVCGLVLVGLMHLWFWMDENERGDR*