Scaffold Ga0068876_10025241

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10025241
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3729
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026746	Metagenome / Metatranscriptome	197	Y
F049578	Metagenome / Metatranscriptome	146	Y
F057764	Metagenome / Metatranscriptome	136	Y
F080050	Metagenome / Metatranscriptome	115	N
F087139	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1002524111	F026746	N/A	MSKTVILSMLAQGNTGDEILSILDVIVSDIEQEGIDSCAEVFAVN*VQYS*
Ga0068876_1002524113	F057764	GGA	MRRAKTPYWNRGPHWGFWKVVFAGWLIRYPGKVFRIIGVPLGILIVMIYNAMTR*
Ga0068876_100252416	F087139	N/A	MLLSKQSFNDQQVLPFIVKKEKERSEDGSYSLHLFSRIVMTKEGKKYRYLPLRFEGEEARFRKRSDAEDYARYRLALD*IYIETSFVRSFFMPKNVI*
Ga0068876_100252418	F049578	N/A	MRPLKYKNLGEMSIIRVPQLVISILPQLQDVMQQLEQNDRDSVEVIAEILSDIQSRVSD*
Ga0068876_100252419	F080050	N/A	MTEQKFLFVGIFTDKNFGTVLAYMAETAQDAWDKCQKLNPTFEVWDWGLADQMV*