Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10016282 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10016282 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4757
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4757

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009331	Metagenome / Metatranscriptome	319	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F020684	Metagenome	222	Y
F026830	Metagenome / Metatranscriptome	196	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1001628210	F026830	AGGAG	MPVPGGEITTTEILVPVVEEVVEDSTTEEDEDDLPELS*
Ga0068876_1001628212	F020684	AGG	MHKAEHIFVLMQKESHMVMSKYALTIEEEATCVEVGYQRQKPYFGDPTKNINYSEGDLWETWQHVVCAGSELAFARMVGKNDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSTRDDDNLVYVLMSDGLCHKTRRNAPDWKGPEYTAIGWKLGSECKRDEWKYNDRTWYVPVIYLNPMESLVFNG*
Ga0068876_100162822	F095162	GGAGG	MENEKRLASAAKQAVYYRNYRRARDRALVKLSQAYPEAYKELLEKEKVSDEQEGKAWIDLDGTTISPRITARAKARGITFTQADPNQGNDGGKA*
Ga0068876_100162823	F014590	GGAGG	VRTGHLSLVTQEHSDTPSVKPNALSPYGPVRAGLTTSPTTQLQQLTELLNSLENVVENLNYKSFTVYDTLTIAIQGVRVALSDIVTDETGTDIV*
Ga0068876_100162824	F013279	AGGCGG	MQYDYRCPECNGEITIERSIHEDPRDPSCFVCHISMIRKWDSPGVTFKGKGFYSTGG*
Ga0068876_100162829	F009331	GAGG	MICQNCRKAGEENTLAHYKRATNWHEKCDFKGCVCQHKTGPGLVKRPNESTPLMQLQSP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10016282

Overview

Ecosystem & Geography

Associated Families

Sequences