Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10009988 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10009988 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6291
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (29.41%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

6291

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (29.41%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F007798	Metagenome / Metatranscriptome	344	Y
F009604	Metagenome / Metatranscriptome	315	Y
F019824	Metagenome / Metatranscriptome	227	Y
F023346	Metagenome / Metatranscriptome	210	Y
F039627	Metagenome / Metatranscriptome	163	N
F045085	Metagenome / Metatranscriptome	153	Y
F079812	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000998810	F009604	N/A	MIKCGCGNEIHPERYELGYKICLSCGENSAKRNQKYGYLHFGHKTAGSIVITSKKAFDNYSKVSYRKGKASNMAYASRLSTSF*
Ga0068876_1000998811	F023346	N/A	MKTEIDTVSKNIILTYARKIRNVQKEQIDPYIGLIENELITLFPELKDREDNALNWAYDIINAESNTEVVETLTRLEKIITNERKEKWICNYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLRKITELESELRNTKRELVNMELRLEHLRSDYPHEPTN*
Ga0068876_1000998812	F045085	N/A	MSKIINLTVGLIFGSIFAIALILVLMIFFAVLIPFFFYFTLKEVLKYLTNTK*
Ga0068876_1000998814	F001840	GGA	MKDQESIFLICDCFEHGLLVEKFKDEEEVSLSLFERGLSGRILPWRERLRWCWQILRHGKPWSDYIILNTENQKQLKDFLK*
Ga0068876_1000998816	F006260	N/A	METELTIKDKVINPIIIQHDDLKFDGKNITIPRYYIDSLCEYIKDYKTEGELQADVEDYQAFRSFLYDVQEYKNGGN*
Ga0068876_100099882	F019824	N/A	MNKYITDNFTGSIDDLLNHCSNLDTSKVEEQVKAEEKEACIQVIMKELECDEAEAEVIYNEIALAEVKETVDKMVAEGLLYVSGHNEDGEPLFQLTELGKAVRNELGDGK*
Ga0068876_100099883	F007798	AGG	MKDTTLKQLVRDRKGQPRGMVVATVIDGAIRFGWSHTNTKAGDRFDKCKALTIALGRAENGWGPKTNVPVSTAKILNKMIDRSVRYYKNVPVYGI*
Ga0068876_100099887	F079812	N/A	MSTKYVTDGKSTRIGYVKDSGSVIYAHGPNGENVGYYQKSTDTTFDRNGKRYGFGDLTNALVFEAARKN*
Ga0068876_100099889	F039627	N/A	MTASFYKTVYQRKFEELPRWKKLAIVEDSERNNWSGLLTEFIKAVIEEAEKEYANSKPNVTTVPVEPKKTLENKVKKTIKKKI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10009988

Overview

Ecosystem & Geography

Associated Families

Sequences