Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10004159 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10004159 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10226
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (67.86%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

10226

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (67.86%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F001043	Metagenome / Metatranscriptome	794	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011299	Metagenome / Metatranscriptome	292	Y
F023344	Metagenome / Metatranscriptome	210	Y
F105172	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000415910	F000447	GAGG	MGYIEIFRIDQDGAGWVDLSEATPDELFNIEVGLLNEGALFTSPEAE*
Ga0068876_1000415911	F004840	N/A	MRLRGRIGEQLMYKITCAYDGNAPHWSAEYENEYGAWENFFLFTDWGFADEYSTVNLYTPAGKCHTKVFYRAGRKVVVK*
Ga0068876_1000415912	F011299	AGG	MTRKDYVATAEILKYVSDKTHPAVFSKMVNDFAEMFAKDNERFDVTRFHEASGYNVPKFTSR*
Ga0068876_100041592	F105172	GAGG	MTLELNDYGLEFDTYVCYIALSWQVIIPATIALIAYKVYKRMRVK*
Ga0068876_1000415923	F000311	GAG	MYFELTAPNRLSMERAYWDAEITGLDPQVIGALTFNIGTGSIEKVSRIRDKYNLTESYVSEYKTTGY*
Ga0068876_1000415924	F001043	AGGAG	MSDYKEGFQDGYKFAREEIIEKLAEIDITDIDTWILDRLSDMIEGGTI*
Ga0068876_1000415928	F023344	AGGCGG	MSEAFTDTVGEHILGAIQVDIEQALFEDWNQSNLDEGEAYAEYRFMQFAPDNLKQSYNEYYGYIEGDEYCL*
Ga0068876_100041599	F007263	GGA	MLNIIDKTDFYEISDEQHFCCDESQFKYYCEEHLEFMGCYFCGFDYSKNCEEQH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10004159

Overview

Ecosystem & Geography

Associated Families

Sequences