Scaffold Ga0068876_10000042

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000042
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90273
• Total Scaffold Genes: 194
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (50.00%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003331	Metagenome / Metatranscriptome	493	Y
F010525	Metagenome / Metatranscriptome	302	Y
F012107	Metagenome / Metatranscriptome	283	Y
F012110	Metagenome / Metatranscriptome	283	Y
F020889	Metagenome / Metatranscriptome	221	Y
F022640	Metagenome / Metatranscriptome	213	Y
F024724	Metagenome / Metatranscriptome	204	Y
F055547	Metagenome / Metatranscriptome	138	Y
F055721	Metagenome / Metatranscriptome	138	Y
F064412	Metagenome	128	N
F067478	Metagenome / Metatranscriptome	125	Y
F085375	Metagenome / Metatranscriptome	111	Y
F088307	Metagenome / Metatranscriptome	109	N
F091309	Metagenome / Metatranscriptome	107	N
F099203	Metagenome / Metatranscriptome	103	Y
F100423	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_10000042105	F088307	N/A	MRTDQEILDNAALKVSQILRISVGEIDKTKFVYLYTLLYNMMGQGPDGQPCEEGDLNMRHWLNTHNSHLGFCPAARLTDEGSMRMIISYLESFL*
Ga0068876_10000042113	F091309	N/A	MTYKLDENVKAFSYTREELFDCIMRIVAHPHTAITQHDKARAMAIFLTFADYLGNYTESDNNFGHVIYESDSTDFEGHVLQLLGKNKPMDFYRTDADELLK*
Ga0068876_10000042119	F055721	GGAG	VNKEEYYKHIEENDTYPEHSHKWIVRTYTGELFYRNFGTFETKEETKEFIENYKVKYTTKGFITRYSIQGVCEVL*
Ga0068876_10000042131	F024724	N/A	MKDLIQVKYYFKEHPNTTLSVFLKTVEQVEAFKAKHPDYVYVGETK*
Ga0068876_1000004215	F003331	GAG	MSLSDKAKIYYNVWCCAYRRRYEAKIKQDWALYEREHSTLLMCLNMKDAKWVIFDSDKKYNILLSLDKTLESE*
Ga0068876_10000042158	F012107	N/A	MNQMRIDIRCPAAPWENHTTDHDKAYDIAFNLSEEYQCDVDLFYNSTGGLYSVVSAY*
Ga0068876_10000042169	F099203	GAG	MRYITITFGPRNDDPSQFYNERTWWDRQSQAEKWGLQSLSIAGCFGYVVIEEGEDSWKIVDELGAPSNAVSVSAEYKGGVTYSVQPAPKLVLV*
Ga0068876_10000042183	F022640	GAG	MRIALLIATLALGLKTGLAAHATVNAYQEAQAERLCQIDPSYCGLKQK*
Ga0068876_10000042184	F020889	N/A	MKNNTTQMSLFSQGWKAEEYFGSELTAHHMNTRSVYRFKENANVSITHSGKYAEDGTVDVFTVSVREEINPRHSVTQTVETFANFLDAYYCGVQCVNNLNLDLITIN*
Ga0068876_1000004226	F055547	AGTAGG	MIATNWFQKKWGLEDPVLTDELYNRIVELEQRVRVLEEENIETTNELYRLENSLDARIDIIAERCQINYDV*
Ga0068876_1000004237	F085375	N/A	MEPQGLPRFERNVSVQMINHITPNWDIKDFYDLNYELSTHKDEELVNQYLSSGHNKEKLSIYKYQLPNPMPKCVDEYIIPHFDFLDKVAAAVNYFKPGQYLPLHTDLFGKYVEINNIGSENVIRCMVMLEDNSPGQILQIKDTAYSTWKAGDCFYWDYHEIHAFYNFSMKDRYAIQITGVKNEKSK*
Ga0068876_1000004243	F010525	GGA	MYTLYVLKGLAPFIGAMCLDNFIRRQGDLCNSKDYPAQVTKYDPQSPENACYRDGIFYPRCKDLENPEVLKYHNLLKAENDKLR*
Ga0068876_1000004244	F064412	N/A	MTNYDKLVDAISNEIYLLNVSHESWDEESAKNTSKRILEIVEEFQQKRSNIIP*
Ga0068876_1000004256	F012110	N/A	MTKALLLLAWVPLLSFASPQPTKTEFLVTISCDTAWELMDIVKNDDVVHQRKEDQLLLELRKDVVTKC*
Ga0068876_1000004257	F067478	AGGAG	MSQATYRGCKYNTDTPKQEYQHWYSETHAPAHPQNKYRGVAYRPCNNWNWEEAK*
Ga0068876_100000427	F100423	N/A	MTLPQQEHNSLIATREFLVDLMNSKKIPGVPEKVRLSARALLKHYPMRHKIDELYSGNTFSEYVSSNKSDITEEEQENNNRIYNNNQTWETPGFKWKTEVEFVPAES*