Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10000023 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10000023 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	109033
Total Scaffold Genes	154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	101 (65.58%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

109033

Total Scaffold Genes

154 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

101 (65.58%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019470	Metagenome / Metatranscriptome	229	Y
F021050	Metagenome	220	Y
F038090	Metagenome / Metatranscriptome	166	Y
F054856	Metagenome	139	Y
F056418	Metagenome	137	N
F060895	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000002310	F060895	N/A	MNTELERLVRAAGAPEEAMDQLWFAIFCQQFADLLITEMEMDQEADLLQVDA*
Ga0068876_10000023119	F054856	AGG	MSKGSRPRQSTVSQEELAARHTEIFGKKEPKPRWVPPPLPDELQTQSSFERQLGTNKLPPGRT*
Ga0068876_10000023120	F021050	N/A	MIINWDVDKVIADCQKMYYGANDNYETGWNNWPCKQDLYRVKFAVEEMLKDTATFTGEQEWLEQLEKEKMWKALKK*
Ga0068876_1000002323	F019470	AGGAG	MTTITVAQMIEALRALPADARLVVTESGYYSYGEFADIMLPEVYTPENDLTPGAPVYRIGHSHQSY*
Ga0068876_100000234	F038090	GGA	VLNPIKKLQENLARDLVSLEDTDLVSEQQLDKITDAYAQVYDIISKAVDKPKE*
Ga0068876_1000002393	F056418	GGTGG	MRSESRSSLYYNAYEYAMTWQQDEIGCIRSLDQKKMQSHIRVRMEYEASRNSHYQRYGEKFISKFTTRCCDNLEGMRALLAAETPPKKMVFFNNYLTVYTNNLGLHGRLMACDWIESVDLKRAELNLPPDTILLKNPQYQYRTYFRGRSLGKTQKSRLAAWITTQGNDVAASKSLREFLDIEIRPTRVYWWRNDVTESYYYIEHNSLQYETMLSMVCPGMVRKTLPIVKKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10000023

Overview

Ecosystem & Geography

Associated Families

Sequences