Scaffold Ga0073909_10611042

Overview

Basic Information

• Taxon OID: 3300005526
• Scaffold ID: Ga0073909_10611042
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 539
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013370	Metagenome	272	Y
F095916	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073909_106110421	F013370	N/A	LFMVVANGSGGQVNPGDSIMMDNNWSWQGGVYGTNAVEFGNNDSVDGPIVGSQILLSNNLTTNAFPLINVVPVGMPSNNAVYAQPNPPHNFSG*
Ga0073909_106110422	F095916	GGAG	MALVMAIGIMSVLGIAGATAMAYSTSGAQQAQQSGSRQNAFSLSEAGVNN