Scaffold Ga0073909_10242114

Overview

Basic Information

• Taxon OID: 3300005526
• Scaffold ID: Ga0073909_10242114
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 798
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F035917	Metagenome	171	Y
F077695	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073909_102421141	F077695	N/A	MSDWSIGPGVAQAIADNGDEARSDERFIIMDEGHKVSLTFARDATYYWYEEDNRVNRAPFR*
Ga0073909_102421142	F035917	GGAGG	MTETQFQFKVVYVDPGDGLIVGMEPSGGAVGNAHKVAVLFEPNEYEILMRTDPAYLSADKDHILAAPDHS*
Ga0073909_102421143	F031594	N/A	RPVAFNADGSLGVVYDELGHSGTIPAAEVQWATDMQGAYNHNFIVLNCPDGCGASSTWPVGGGADAAMGQQMFVNKVISEGCACGHVAAADADTLGESHVRLNVNRMDGPGRWQLA*