NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0068877_10056665

Scaffold Ga0068877_10056665


Overview

Basic Information
Taxon OID3300005525 Open in IMG/M
Scaffold IDGa0068877_10056665 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2561
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F006743Metagenome / Metatranscriptome365Y
F037113Metagenome / Metatranscriptome168Y
F042880Metagenome157Y
F051794Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0068877_100566651F042880GAGMANYTTIGELIEHLKGEDLSAPIIYQYYLAEHFEISEEVFAEVARDFDSLIPCSDSYEVISSEINSKREEVNA*
Ga0068877_100566655F037113AGGAGGMSKGWTVWVGGSEINWQHYTHKIDAERIAEFWREVKGYDDVRVEEVA*
Ga0068877_100566656F002827GGAGGMNKEYYQAKADLCRDLFIKQVGEGDNKEAGANLIRMVNALNQINLINYKEEKGNEAN*
Ga0068877_100566657F005146AGGAGGMKLTNFYEVADRKGDTAWGGASESEAVEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITKLVLTTIVSERGRG*
Ga0068877_100566658F051794GGAGGMKTIDKRKEKAERRAVWLRNYQRARGRALTKLAQQYPDQYKEILEQERLSDEANGKAWLDITGATDNSAGVLTNADGYNNTLRSEQTNGDKQDEGYLGGEK*
Ga0068877_100566659F006743GGAGGMRTENWQSNTPGLRLVGEGESGSASSPYGPMRADLTTTHRTQLLVLSELLNSLEKEVEILHSKYCEAYVILIDVMERLAKLTSSLLPTDIIKEKDV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.