Scaffold Ga0068877_10032273

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10032273
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3578
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F006743	Metagenome / Metatranscriptome	365	Y
F010680	Metagenome / Metatranscriptome	300	Y
F016263	Metagenome / Metatranscriptome	248	Y
F088554	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_1003227311	F002827	AGGAGG	VNKEYYQAKADLCRDLAIKQMVEGDSKEAGANLIRMVNALNELQLINYKEEKNETV*
Ga0068877_1003227313	F016263	AGGAGG	MPKCGVCGWNFSDRTLTKHAETACGLEEEKADRVAYSPEIDDLIKEMEESNEYR*
Ga0068877_100322733	F088554	GGAGG	LTEKYSWYKAALRRKKIEEAKRLKAARYVDEMNKRANDKSTTSNTQ*
Ga0068877_100322735	F010680	AGGAGG	LAIVIQLSQAEVRVCALIAVERWLVKFGSEDRPNYASGKKFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKQRKNISDVGDLEVRTVRTQSAIPFWKKDVGRTIVGTKVLDEEYYSLVEIYGKFQADDFMIEQFSDPSIDGWRVPVELLEV*
Ga0068877_100322737	F006743	GGAGG	MKIEKEPRPMRGLRLVGEDESGSASTIYGPVRAGLTTSHRTLEAALLESLKCLEREVETLNSKYCEAYVTLVSVMEHLVRLIAIINAKDTTD*
Ga0068877_100322739	F005146	GGAG	MKLVNFYEVMDRKGDIAWGGASPSDAVEWFRRGLDNSIFVSVWNEQDIENPVLVTDKIEVTALVLATITSERSRG*