Scaffold Ga0068877

Basic Information
Taxon OID	3300005525 Open in IMG/M
Scaffold ID	Ga0068877_10001000 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005525 Open in IMG/M

Scaffold ID

Ga0068877_10001000 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23928
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (89.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

23928

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (89.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F012767	Metagenome	277	Y
F017816	Metagenome	238	Y
F021066	Metagenome	220	Y
F033002	Metagenome	178	Y
F083632	Metagenome	112	N
F102622	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_1000100013	F002540	AGGAGG	MSMPNYQGTADEYAKFGPMLNVWQQLQLLSQWSPLIGFGQRFVNEIDPYRKSLVVSDLAEWLASKTNAQTDDRLVQLLAEVLKTPQGENLVRFLLLQAEAAK*
Ga0068877_1000100015	F012767	GGAG	MAGVTATISVTAFRADWETHMPMRALCERYTITRDQVIRLRDVWHLPLRNDRRLRFKPRRCDMRDPTPREIIQACKEIQAKWDARTREERAVIKTQHVSLRRIEMTDEAREAFGQFEDE*
Ga0068877_1000100019	F017816	N/A	MAPWLIALTGGIYLVVAADLVLHGKAGLGLAYLGYAFANVGLYLAARAS*
Ga0068877_1000100034	F102622	GGAGG	MPRTWNAAIHSLLCIRLGQELGTSSELAQTIAHSIDFAVGTLARILG*
Ga0068877_1000100038	F033002	GGAGG	LEKLSDAYLQQCEWDARKFSGCWDQGTSGTLAAHVMRLLAELSRTKGDLAVERARRVDS*
Ga0068877_100010005	F021066	N/A	VQAILKFNLSDPDDERAHRYALAGRDALIALEQIDEHCRGRIKHGQPTTDEVHALEYVRAMIPHDIVNLLH*
Ga0068877_100010009	F083632	GGAG	MSLEDLDAYVWSQLSPRRYAAGRPLVARLTKRVVRKFPHLVMSQTRPESYDMVMHEIARSIERSERQNYGMGIILTLVLSALLSEIVKAVLRWWLQSASHRAVMLGWQTEMRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068877_10001000

Overview

Ecosystem & Geography

Associated Families

Sequences