Scaffold Ga0068877_10000364

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10000364
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38956
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (50.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005206	Metagenome / Metatranscriptome	408	Y
F011216	Metagenome / Metatranscriptome	293	Y
F014610	Metagenome / Metatranscriptome	261	N
F016254	Metagenome	248	Y
F016803	Metagenome / Metatranscriptome	244	Y
F016961	Metagenome / Metatranscriptome	243	N
F031459	Metagenome / Metatranscriptome	182	N
F058105	Metagenome	135	N
F078766	Metagenome / Metatranscriptome	116	Y
F087086	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_1000036413	F016254	N/A	MAKGKETAVIQVERGEKPRLRAKPEKGTKMRLSDDVKRKALEAAQYGMPIDRIAILCGFPAGNQTQWARWINANPAFQMELDQARAEGELTLQRRIINGEANWQSAGWLLERTRGYVARAQLEHTGKGGKELSVSGALLGAFGGSK*
Ga0068877_1000036416	F087086	AGGAGG	VKYRLGFSIVASFSGEHPDLCEWHPCETTLPDVLREWPGLPVEPSEPFDSEYNYLAKEGSIPRAILDRLDNVRGETRFQICRKLKEKFGREAFWACISDVQMSGIFDRETAFKFLDSIGAGFETTQTMGTIGGPLGHWCPDFAFNVQSQVLISSIRLTPVLCTVSESGELEPVRPPSEWQWERFADLFKRFDCFDLARQGRAIDAH*
Ga0068877_1000036428	F011216	AGGAGG	VNHLVNANKKVSKTPRTDRQPFVTVAFTEFVKAGFARQLERQLAAANKRIKELEAKVDELNEFKKWLEGR*
Ga0068877_1000036437	F016961	AGGA	MRDNMNTALTIVSMAVLMPLCVIAGIYVGHTLTIKSQKTTTNEQSNRNRM*
Ga0068877_1000036439	F005206	N/A	MKFKVDRSQAEVKPFPGPGEYTVVIHSTKDEGLDKNGNPVVVLRYKGAGGEVISDRFTLKDTMMWRLQALISATEADIKDGDEFDFSIGGAFQRFLQGFVGLAMGIVIEEEKYTDKNGAEQTALRVRRMKKLPSDNDI*
Ga0068877_100003644	F014610	GGAG	MPIYTFENNGRTIEHIAPMGTDSVVLDGKRWTRQPVARFGVTGFAREAELKDHVKKGFSRMEDRHGSRFASTFTKNQIRKIWDI*
Ga0068877_1000036447	F058105	N/A	MTPHPTIIAAAKLLKEKWPTCSTWNNDQILNWIGIFNAKKQIGIVQDENGECCGVGAVRFLHSAEQAEDIYANYPDGHIAWIEMVATTKPLAVQTLWLAMKNMCPPQVTKLGGVRKGVSRLYDFQRYHTLLMNRI*
Ga0068877_100003645	F078766	N/A	MISIPVEALSTDMEDGQQAMPEVGDEVVLDDVRGILKKLDGGEAYIEIRSVNGMPAEYENKGEKSMANKDPMDEKGMREMVEEYDTEMES*
Ga0068877_1000036457	F031459	N/A	MQPPDTSNSGSGIGVSLAMAATAGLVSLIPQLTEWFQLGTAILAFIAAAVALYKAIKK*
Ga0068877_1000036458	F001272	N/A	MIKIELTQEQANQLLQLIDVAVKAGGVANARAALPLVDLILAAAQKPKPE*
Ga0068877_100003648	F016803	AGAAGG	MISFIARARAAWTFTRHQRWVDPLPWRKEDANALNTFFKSDTGKRFRDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEVMADQESITGQDDDPDSATNT*