Scaffold Ga0070374_10208553

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10208553
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1004
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F029021	Metagenome	189	Y
F029678	Metagenome	187	Y
F103146	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_102085533	F011646	AGGAG	MPVYLIVCGKMRTKMSNVLELRNGSVKRIIFYEVADAQNIAIWGGESALDALKWYRNSPNGSKIYVQEWLTDEENAKEVSSQIEITPIVLSTIANCMDRWV*
Ga0070374_102085534	F103146	GAGG	VSEPRYLSGDEYALNGVEGEEEETGDAGLPDRMWEDED*
Ga0070374_102085535	F029678	AGGAGG	MKRINGFIIFNKETGQKMATLPLTIPIGSTVEAYEKAGHNVTWGWEEVASE*
Ga0070374_102085536	F029021	N/A	FCGWEIARVDWYHRYNDKLICDNCVMDTMSEREREEVNK*