NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1010722

Scaffold Ga0074648_1010722


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1010722 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6060
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009330Metagenome / Metatranscriptome319N
F009856Metagenome / Metatranscriptome312Y
F042877Metagenome / Metatranscriptome157Y
F063638Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0074648_101072216F063638GAGMIDTLDTIVYAVDSLATTVLPTVITPSEPWYVTHYVELIFIGLAAIKAVLNLVPSEQPRVIFGYVDTLIGLIFKDRRK*
Ga0074648_10107223F009330GAGVTLSRYLEKNYDDLLQAAHRIAGRDGDDLFHEVILQLYQTKDETIKGLLERGQMKYWILRVMVNNYNSKTSRYHYKWRKDMERRRKFARHIMDWWDGDGVAAHRDALLSHIEERLAELPWFDAEVFAIYFEEGHTLDSFAEATGISRHTLYTTIRRVRKEIQRTGRQNRETHEGDGNR*
Ga0074648_10107225F042877GGAMTHGILAAIALLTFAQLGVEYFQENQVRVFGIVTLLLSCLGLLA*
Ga0074648_10107227F009856N/AMKFWFDGDDAQRYGLPAAAVLAHLKYWIERNTHAGEEPCMTQSMKEMQAYISFLTVPQIKRALAKLEEGEAIYRKANGFDRRHTYCLGTESSHARDESVPSKGPYRTNEGTELSRVHIETNTLKTTESTAYARPTEDEVVEYFRDIGAADLAAQLGLEFHTHYESTGWIVSGVPMAQWKPKARSWLARRRNQQSNDRRKGFNPTNFTPEGLKDFIDNG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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