Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1007330 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1007330 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	7953
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (78.26%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7953

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (78.26%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009188	Metagenome / Metatranscriptome	322	Y
F010536	Metagenome / Metatranscriptome	302	N
F026571	Metagenome / Metatranscriptome	197	N
F036728	Metagenome / Metatranscriptome	169	N
F072377	Metagenome / Metatranscriptome	121	N
F087228	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100733010	F026571	AGGA	MKKYRVNVVGTKYVTTDTEDKAIEHTQEMLDHIHKSLNMQVFSIAEVKETE*
Ga0074648_100733018	F010536	AGGA	MIDVMLSKATEGMLIAELLNRKNEKGMNLFMGRSILLPTGQQQLIAILPNIQLLTNTKQEEE*
Ga0074648_10073302	F087228	AGG	MKRTEYKYYIQYSNRRTEERTIYIDDNNNYVYKYKDRYLEVYDYEYNRVNIPIDKMTRSMLNEYTKSLIKNCKNSWIAQREEQHKVNEYRKFINMFVAKDSLHYLDKLDEKIDEYKVNIELFDDQKLESVG*
Ga0074648_100733023	F009188	N/A	DTGQIYEGRGFGNRSAAQGGNSRQEINYNNKHYVAVCWLGGSEPTHKPSDKAIESVKWLYSQVKGELRPHSSFKQTACPGDAWRQFIIEWDKVDTETLKKSTNITAEDLSNASGPDMIHPQAFQKKLDIIIAKLENIENKLKLGKLIQ*
Ga0074648_10073305	F036728	N/A	MSMVLKQKIELPLDCRYIFVNYNNNLKPFKTTKEVLHFIEGNRLEIVDQQTFNQSYVVVVKKADSFL*
Ga0074648_10073309	F072377	AGG	MSYVNQIDWTCGCMRMTEFDYRSGKERTVGRSYCRKQDCDRKGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1007330

Overview

Ecosystem & Geography

Associated Families

Sequences