Scaffold Ga0074648_1006360

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1006360
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8783
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006094	Metagenome / Metatranscriptome	382	Y
F024295	Metagenome / Metatranscriptome	206	Y
F035125	Metagenome / Metatranscriptome	173	N
F067203	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100636012	F067203	AGGAG	MPSMTWKDIEVSELSEQDKRYMVMYGCTQDDMVCMMNDPMNFIGGHYMLAMSILSDAQECIKRGMDETARQYINRAKYVLREWNND*
Ga0074648_10063604	F024295	GGAG	MKYIVELLLTYEVDAPDMRQAQTIAMQRAIDLCDSEDDLFKHIDKDMKCVSSMVRDVSLVDEEIDT*
Ga0074648_10063605	F006094	AGGAG	MLLHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVLIQDGAIIEELNLLGRSEQYAEDTAEDWVMGVRR*
Ga0074648_10063607	F035125	AGGAG	METAKKKITVRFVVEQDFEVEVRDSDLGMGSFYAIGDVMVSSGFDQWDLLTHENVFDNPVGDMRPVHDSHWSDANLYNLGLHSEYIQPWLFEGQTDKDPYAETEDEENDNA*