Scaffold Ga0074648_1003083

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1003083
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14415
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F008346	Metagenome	335	Y
F008595	Metagenome / Metatranscriptome	331	Y
F012117	Metagenome / Metatranscriptome	283	N
F013088	Metagenome / Metatranscriptome	274	Y
F034894	Metagenome	173	N
F037180	Metagenome	168	Y
F059861	Metagenome	133	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100308310	F007417	AGGGGG	MRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIAEGHKVKLTKEKKNG*
Ga0074648_100308312	F008281	AGAAGG	MNLMCNTKHGAIQWRWKDSGQPSPEYKSLNHQWWIPNKSEFELVTKVDASIKQEIKDEIWEDMQSDFEYQKSIYKIHKLNLKEKK*
Ga0074648_100308314	F034894	AGGA	MNVTFNLMGGGELNIPPRVISGFYKCHYTGDVIVEVNGDEYKVRDSLDEIKYILGIAR*
Ga0074648_100308318	F013088	GGAG	MDEKTKKALWIPEELHKDIKVFAITNNMNIESATQLLLKLGMVSYKESNHGSK*
Ga0074648_100308320	F067646	AGGA	MLEWILYFIAAIFGLVFIGAIISVIAAIYILNELD*
Ga0074648_100308323	F006845	AGG	MKSYKEQMDLNSYLLEQDFEEYCRFAYDKITSACQFLGIYNDEDYESFKERCYTQLEADYLNSIEKTIH*
Ga0074648_100308324	F012117	GGAG	MVDILGGMINPNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKADGFEYHWDNKFGVVSPKPADDYKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSLLATFWNQMDASSASLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF*
Ga0074648_100308326	F002221	AGG	MKTYIDETLESKLKELRTYENNNYVKWGNRKRIFKIVGVQFEIKFCKAEQLLRESLQNDSAQKKLKMVEMMLRAYEQLNIKCEESGYAQIQPNARCFNFDNKTALICDTDADKPLLEKIHKDEDNIVIFSVEELLRCIPKDFMQAKVLLSKLDKSVNFKSINYV*
Ga0074648_100308328	F059861	N/A	MSKFYQEDLPYGEVGEKFVLSIINRKHPMAYKMEGYFLEYDIMIPEIEKTVEVKRDKHTDRTGNVFIETYCNKIESGINASTADYWAYLTKTMLYWIKSIDLKLCILENEIPEGKNYMIDGKIIDAYLIPIDIFKNYCMRIDTLTEEQLCQLN*
Ga0074648_100308329	F008346	GAGG	MPIKLKPSVKIRDRATGKTATEHYYLKCMTPKELNDYIESPSSKKKVIQKCKNEITKRRKK*
Ga0074648_10030833	F008595	AGGAG	MSKEENKMENQEPVIITFNNVEYRASDLNEEQMALAAKLNVAGKKLARLQEHYDDYVITNEYKNLVIESFDRAINAKEEVEVVEEE*
Ga0074648_10030836	F037180	AGG	MSRIAKVDDKSTLNISLSYLLQIIGVIAVAVWGYAYTTEKIDFNEREIQNLRANQNKYIFPDIRVLEEQVIKLEKEVIILKTELEAYKKQEK*
Ga0074648_10030838	F001942	N/A	MPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLCMELNRCMYTIQVKSRRATKQNKFIFAAENSRSQSETYKNYHCDILAFVFFYDDQKRIMFKANTSSQNYFTFDKKAITESMELDSLKETLDSLSSVPVLNPII*