Scaffold Ga0074648_1002701

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1002701
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15708
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F026124	Metagenome	199	N
F044149	Metagenome / Metatranscriptome	155	N
F044429	Metagenome	154	N
F057324	Metagenome / Metatranscriptome	136	N
F067233	Metagenome	126	N
F085797	Metagenome / Metatranscriptome	111	N
F103900	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100270110	F085797	AGGAGG	MSKIGDFLIGLTEDAEYVIGGCEDFEQFCSKMRKLNDMYLPSSLVDIWEEHVSSQEDLNVNHYIRRAR*
Ga0074648_100270114	F044149	GGA	MDNLETITDPIEEVLELMVKHQLAVVADKKLDLVKAIRRLQRQLAKTKETNKNFNEQWKFLHDAHEDLMGQVEKIYGV*
Ga0074648_100270116	F026124	GAG	MYKLDKAALKESMADTFMGTAINLPLVWLVLTVCLMFTENALIISIAQASLLTVVAIIRRYCTRMWFKGREIND*
Ga0074648_100270121	F020533	N/A	MEFNKMNKCIVKGMFFMQDAILLEQDDLVKEFERKVRDKKIFFEVINPGETESKGVDIQAMLEENNKLKSELRIFKDIVDHSITADARRGFDG*
Ga0074648_100270124	F044429	AGGAG	MSELPPIEDRMPECEWVLVIKYGDPYTNTPLTTGFGPFKTKEDADDFRAQYYYDQIVIADIVPINAVLPQSATELDIDFIPEGKVVDISSKINPHKH*
Ga0074648_100270126	F103900	GGAG	MSNHRNEIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0074648_100270127	F057324	GGGGG	MNITDDLVKDWLDKFDSNNEITLLTEIANNNICVSGMIDSILAYHVGEVEIAKDFYKRMWRSQS*
Ga0074648_100270135	F067233	AGG	MCWTVPKRKIKMNNLDVINCEVCKKNFDWNNELAGCLDIEEILDCSDTQINKWQEQNKNIDLQSYFCSECANKTIQAIEENENEPR*