Scaffold Ga0074648_1002585

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1002585
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16182
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.81%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029763	Metagenome / Metatranscriptome	187	Y
F049006	Metagenome / Metatranscriptome	147	N
F093905	Metagenome / Metatranscriptome	106	N
F093906	Metagenome / Metatranscriptome	106	N
F100982	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100258517	F100982	N/A	MYINFKQIDELEKVVNSITCSNIDTDTFKCLNENQRSYLRNEIVRTLDTMLNLD*
Ga0074648_100258518	F093905	N/A	MKHINKKEFNDFYTIMKNNSDKSVLEVYNLYKSLRANNLMPKELISNKIK*
Ga0074648_100258519	F049006	N/A	MTKLEFIDVCVRHTVSHTQVMEDLLLSGNKHPHDLTVEELNEFMWETY*
Ga0074648_100258528	F093906	N/A	MMMFLNTNGRQGTSSFSLNFEFTDEQIKLLKKYGDQITAIYYSEKNNKGKLKIQAHDYPEI*
Ga0074648_100258535	F029763	N/A	MRKLIIFLLITNFAFAQKIERIPPELYGQWYNQDLELLTIQPNETFIRRNTEGVLASGKLELVDGELRVIRNDIDDEYQLLFYIGEASFVVAKPRSTQAWLFYRLGN*