Scaffold Ga0074648_1001188

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1001188
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 28664
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (89.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006094	Metagenome / Metatranscriptome	382	Y
F016061	Metagenome	250	Y
F024295	Metagenome / Metatranscriptome	206	Y
F035125	Metagenome / Metatranscriptome	173	N
F079341	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100118816	F035125	AGGAG	MEKTKKKITVRFVVEQDFEVEVRDSDLGMGSFYAIGDVMVSSGFDQWDLLTHENVFDNPVGELRPVHNDHWSDVNLYNLGLHSEYIQPWLFEGQKDKDPYEEEEENDDAVT*
Ga0074648_100118817	F006094	AGGAG	MLLHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVLIQDGAIVDELNLLGRSEQYAEDTAEDWVMGVRR*
Ga0074648_100118818	F024295	GGAG	MKYIVELLLTYEVDAPDMRQAQTIAMQRGVDLFHSEDDLFKHIDKDMKCLSSMVGEISVVEEKDKKGELR*
Ga0074648_100118838	F079341	N/A	LTLKQRSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKEKENGSKD*
Ga0074648_10011887	F016061	AGGAG	MSYIKVKVTNILNAIAGAKPTIDRQNYATYNRMGKYYVGPSANGKFLQVNDGLHIRYYGNPFWNLYRVVSKNGNDFVIHQAK*