NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F079341

Metagenome Family F079341

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079341
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 43 residues
Representative Sequence LSGKLVWKRGDGWVQYNPPRSHPSYEEWQKLKQKEKENENE
Number of Associated Samples 76
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 49.14 %
% of genes near scaffold ends (potentially truncated) 42.24 %
% of genes from short scaffolds (< 2000 bps) 78.45 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (46.552 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(45.690 % of family members)
Environment Ontology (ENVO) Unclassified
(68.103 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(90.517 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.19%    β-sheet: 11.59%    Coil/Unstructured: 65.22%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF10544T5orf172 12.07
PF03819MazG 10.34
PF02867Ribonuc_red_lgC 5.17
PF02511Thy1 3.45
PF05367Phage_endo_I 1.72
PF11753DUF3310 1.72
PF00145DNA_methylase 0.86
PF13455MUG113 0.86
PF13578Methyltransf_24 0.86
PF00476DNA_pol_A 0.86
PF02945Endonuclease_7 0.86
PF11651P22_CoatProtein 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 5.17
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 3.45
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.86
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 0.86


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms47.41 %
UnclassifiedrootN/A46.55 %
unclassified Hyphomonasno rankunclassified Hyphomonas6.03 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10009694Not Available5053Open in IMG/M
3300000116|DelMOSpr2010_c10015660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3808Open in IMG/M
3300000116|DelMOSpr2010_c10130408Not Available892Open in IMG/M
3300000117|DelMOWin2010_c10025326All Organisms → Viruses → Predicted Viral2995Open in IMG/M
3300000949|BBAY94_10134699Not Available672Open in IMG/M
3300001450|JGI24006J15134_10004404Not Available7442Open in IMG/M
3300001460|JGI24003J15210_10061365All Organisms → Viruses → Predicted Viral1208Open in IMG/M
3300001748|JGI11772J19994_1004940All Organisms → Viruses → Predicted Viral2556Open in IMG/M
3300001748|JGI11772J19994_1012694All Organisms → Viruses → Predicted Viral1385Open in IMG/M
3300003617|JGI26082J51739_10039516All Organisms → Viruses → Predicted Viral1626Open in IMG/M
3300003908|JGI26085J52751_1011516All Organisms → Viruses → Predicted Viral1391Open in IMG/M
3300004097|Ga0055584_101172288Not Available802Open in IMG/M
3300004369|Ga0065726_12745All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria23282Open in IMG/M
3300004448|Ga0065861_1063599All Organisms → Viruses → Predicted Viral1871Open in IMG/M
3300005512|Ga0074648_1000702All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria40333Open in IMG/M
3300005512|Ga0074648_1001188Not Available28664Open in IMG/M
3300005512|Ga0074648_1041294All Organisms → Viruses → Predicted Viral2136Open in IMG/M
3300005512|Ga0074648_1055702All Organisms → Viruses → Predicted Viral1668Open in IMG/M
3300005738|Ga0076926_133153All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300005747|Ga0076924_1023289All Organisms → Viruses → Predicted Viral1010Open in IMG/M
3300005747|Ga0076924_1230466All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria952Open in IMG/M
3300006025|Ga0075474_10018748All Organisms → Viruses → Predicted Viral2534Open in IMG/M
3300006025|Ga0075474_10117553Not Available850Open in IMG/M
3300006025|Ga0075474_10175576Not Available665Open in IMG/M
3300006025|Ga0075474_10255375Not Available526Open in IMG/M
3300006025|Ga0075474_10262420Not Available517Open in IMG/M
3300006026|Ga0075478_10144805Not Available743Open in IMG/M
3300006026|Ga0075478_10257820Not Available521Open in IMG/M
3300006027|Ga0075462_10035430All Organisms → Viruses → Predicted Viral1600Open in IMG/M
3300006637|Ga0075461_10248234All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae522Open in IMG/M
3300006735|Ga0098038_1211407All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae624Open in IMG/M
3300006749|Ga0098042_1006426All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales3909Open in IMG/M
3300006802|Ga0070749_10211339All Organisms → Viruses → Predicted Viral1109Open in IMG/M
3300006802|Ga0070749_10312004Not Available880Open in IMG/M
3300006802|Ga0070749_10316657All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011872Open in IMG/M
3300006802|Ga0070749_10480996Not Available678Open in IMG/M
3300006802|Ga0070749_10770402Not Available512Open in IMG/M
3300006810|Ga0070754_10031963Not Available2927Open in IMG/M
3300006810|Ga0070754_10387833Not Available613Open in IMG/M
3300006810|Ga0070754_10434464Not Available571Open in IMG/M
3300006810|Ga0070754_10497866Not Available525Open in IMG/M
3300006867|Ga0075476_10001016Not Available13008Open in IMG/M
3300006867|Ga0075476_10121529Not Available992Open in IMG/M
3300006869|Ga0075477_10357013Not Available573Open in IMG/M
3300006916|Ga0070750_10077800All Organisms → Viruses → Predicted Viral1561Open in IMG/M
3300006916|Ga0070750_10078409All Organisms → Viruses → Predicted Viral1553Open in IMG/M
3300006916|Ga0070750_10324082Not Available654Open in IMG/M
3300006916|Ga0070750_10453862Not Available529Open in IMG/M
3300006916|Ga0070750_10492441All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae503Open in IMG/M
3300007345|Ga0070752_1203543Not Available788Open in IMG/M
3300007538|Ga0099851_1107061All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1062Open in IMG/M
3300007539|Ga0099849_1111076All Organisms → Viruses → Predicted Viral1085Open in IMG/M
3300007539|Ga0099849_1113655All Organisms → Viruses → Predicted Viral1070Open in IMG/M
3300007539|Ga0099849_1327938Not Available548Open in IMG/M
3300007540|Ga0099847_1222865All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria546Open in IMG/M
3300007640|Ga0070751_1110795All Organisms → Viruses → Predicted Viral1127Open in IMG/M
3300007640|Ga0070751_1197832Not Available783Open in IMG/M
3300009027|Ga0102957_1259066unclassified Hyphomonas → Hyphomonas sp.631Open in IMG/M
3300010296|Ga0129348_1082497All Organisms → Viruses → Predicted Viral1141Open in IMG/M
3300010300|Ga0129351_1102742unclassified Hyphomonas → Hyphomonas sp.1146Open in IMG/M
3300010316|Ga0136655_1125046Not Available771Open in IMG/M
3300012928|Ga0163110_11793825Not Available500Open in IMG/M
3300013010|Ga0129327_10838018Not Available524Open in IMG/M
3300017721|Ga0181373_1002251All Organisms → Viruses → Predicted Viral3787Open in IMG/M
3300017726|Ga0181381_1065271All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales786Open in IMG/M
3300017739|Ga0181433_1146770All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon556Open in IMG/M
3300017748|Ga0181393_1085034All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales826Open in IMG/M
3300017824|Ga0181552_10245546unclassified Hyphomonas → Hyphomonas sp.903Open in IMG/M
3300017824|Ga0181552_10331372Not Available743Open in IMG/M
3300017951|Ga0181577_10561878Not Available707Open in IMG/M
3300018413|Ga0181560_10076597All Organisms → Viruses → Predicted Viral1864Open in IMG/M
3300018415|Ga0181559_10083186unclassified Hyphomonas → Hyphomonas sp.2007Open in IMG/M
3300018417|Ga0181558_10127496All Organisms → Viruses → Predicted Viral1541Open in IMG/M
3300018417|Ga0181558_10225162All Organisms → Viruses → Predicted Viral1060Open in IMG/M
3300018417|Ga0181558_10473445Not Available655Open in IMG/M
3300018424|Ga0181591_10253401All Organisms → Viruses → Predicted Viral1361Open in IMG/M
3300019459|Ga0181562_10014519Not Available5235Open in IMG/M
3300021347|Ga0213862_10099154All Organisms → Viruses → Predicted Viral1025Open in IMG/M
3300021958|Ga0222718_10031662All Organisms → Viruses → Predicted Viral3531Open in IMG/M
3300021958|Ga0222718_10042963All Organisms → Viruses → Predicted Viral2926Open in IMG/M
3300021958|Ga0222718_10287805Not Available858Open in IMG/M
3300021959|Ga0222716_10068390All Organisms → Viruses → Predicted Viral2471Open in IMG/M
3300021960|Ga0222715_10099795All Organisms → Viruses → Predicted Viral1877Open in IMG/M
3300021960|Ga0222715_10317517Not Available879Open in IMG/M
3300021962|Ga0222713_10198395All Organisms → Viruses → Predicted Viral1345Open in IMG/M
3300021964|Ga0222719_10024381All Organisms → Viruses → Predicted Viral4807Open in IMG/M
3300021964|Ga0222719_10138697All Organisms → Viruses → Predicted Viral1729Open in IMG/M
3300021964|Ga0222719_10528861Not Available701Open in IMG/M
3300021964|Ga0222719_10721760Not Available559Open in IMG/M
3300022067|Ga0196895_1002326All Organisms → Viruses → Predicted Viral1985Open in IMG/M
3300022068|Ga0212021_1122041Not Available533Open in IMG/M
3300022071|Ga0212028_1037199Not Available898Open in IMG/M
3300022074|Ga0224906_1001585Not Available11106Open in IMG/M
3300022158|Ga0196897_1000951All Organisms → Viruses → Predicted Viral3705Open in IMG/M
3300022168|Ga0212027_1042093Not Available586Open in IMG/M
3300022187|Ga0196899_1009422unclassified Hyphomonas → Hyphomonas sp.3932Open in IMG/M
3300022200|Ga0196901_1185444Not Available675Open in IMG/M
3300022929|Ga0255752_10166039All Organisms → Viruses → Predicted Viral1078Open in IMG/M
3300023084|Ga0255778_10230870All Organisms → Viruses897Open in IMG/M
3300023180|Ga0255768_10126142All Organisms → Viruses → Predicted Viral1664Open in IMG/M
3300024344|Ga0209992_10374820Not Available567Open in IMG/M
(restricted) 3300024519|Ga0255046_10515464Not Available573Open in IMG/M
3300025120|Ga0209535_1097223All Organisms → Viruses → Predicted Viral1065Open in IMG/M
3300025543|Ga0208303_1083466Not Available703Open in IMG/M
3300025610|Ga0208149_1102374Not Available686Open in IMG/M
3300025610|Ga0208149_1122279Not Available611Open in IMG/M
3300025671|Ga0208898_1002606Not Available10989Open in IMG/M
3300025687|Ga0208019_1103594unclassified Hyphomonas → Hyphomonas sp.869Open in IMG/M
3300025751|Ga0208150_1005687unclassified Hyphomonas → Hyphomonas sp.4600Open in IMG/M
3300025767|Ga0209137_1071745All Organisms → Viruses → Predicted Viral1513Open in IMG/M
3300025828|Ga0208547_1046217Not Available1536Open in IMG/M
3300025828|Ga0208547_1121447Not Available776Open in IMG/M
3300025828|Ga0208547_1210972Not Available518Open in IMG/M
3300025853|Ga0208645_1248044Not Available595Open in IMG/M
3300025853|Ga0208645_1260196Not Available571Open in IMG/M
3300034374|Ga0348335_080027All Organisms → Viruses → Predicted Viral1104Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous45.69%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh11.21%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water9.48%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.17%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment5.17%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater4.31%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.45%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.45%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.59%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.59%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.86%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.86%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.86%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.86%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.86%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.86%
SalineEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline0.86%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.86%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000949Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94Host-AssociatedOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001748Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)EnvironmentalOpen in IMG/M
3300003617Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNAEnvironmentalOpen in IMG/M
3300003908Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004369Saline microbial communities from the South Caspian sea - cas-15EnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005738Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0EnvironmentalOpen in IMG/M
3300005747Seawater microbial communities from Vineyard Sound, MA, USA - control T14EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018413Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018415Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022067Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022071Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)EnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022158Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022929Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaGEnvironmentalOpen in IMG/M
3300023084Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaGEnvironmentalOpen in IMG/M
3300023180Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaGEnvironmentalOpen in IMG/M
3300024344Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025767Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1000969463300000116MarineMSKLVWKRGDGWVQFNPPRSHPSYEEWRKLKEKEAKEGEGK*
DelMOSpr2010_1001566023300000116MarineLTSKQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENENE*
DelMOSpr2010_1013040823300000116MarineLTSQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENENER*
DelMOWin2010_1002532623300000117MarineMSKLVWKRGDGWVQYNPPRSHPSYAEWQKXKXKEAKEGEGK*
BBAY94_1013469923300000949Macroalgal SurfaceLTSKQRSDKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEKENKHE*
JGI24006J15134_1000440453300001450MarineMKSSLIWKRGDGWVQFNPPRSHPCYNEWMKLKEKEKDNEGTRTEGS*
JGI24003J15210_1006136543300001460MarineLTSKQHKDKLVWKRGDGWVQYNPPRSHPSYEEWKKLKEKEKQDEKHAD*
JGI11772J19994_100494023300001748Saline Water And SedimentLTSKQRSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKEKENGSKD*
JGI11772J19994_101269433300001748Saline Water And SedimentLTSKQLSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKQKENENE*
JGI26082J51739_1003951633300003617MarineMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKQKEKEKDNED*
JGI26085J52751_101151613300003908MarineLTSQQLSGKLVWKRGDGWXQYNPPRSHPSYEEWQKLKQKEKEKDNEGRPD*
Ga0055584_10117228823300004097Pelagic MarineMSKLVWKRGDGWVQYNPPRSHPSYAEWQKLKEKEAKEGEGK*
Ga0065726_12745163300004369SalineMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEAKEGESN*
Ga0065861_106359923300004448MarineMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEAKEGEGK*
Ga0074648_1000702143300005512Saline Water And SedimentMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKDAEKVRS*
Ga0074648_1001188383300005512Saline Water And SedimentLTLKQRSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKEKENGSKD*
Ga0074648_104129423300005512Saline Water And SedimentLTSKQHSGKLAWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENENE*
Ga0074648_105570253300005512Saline Water And SedimentLTSKQLSVKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKENENEG*
Ga0076926_13315323300005738MarineLTSKQRSDKLVWKRGEGWVQYNPPRSHPSYEEWKKLKEKEKENE*
Ga0076924_102328923300005747MarineLTSQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKQKENENER*
Ga0076924_123046633300005747MarineVPQVSVRLLTSQRPNPKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEKEKDG*
Ga0075474_1001874853300006025AqueousLTSKQHSGKLAWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKENENE*
Ga0075474_1011755323300006025AqueousLTSKQLSVKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKENENE*
Ga0075474_1017557633300006025AqueousLTSKQLSGKLVWKRGDGWVQYNPPRSHPSYEEWKKLKQKEKENENE*
Ga0075474_1025537533300006025AqueousSSGFERSMSKLVWKRGDGWVQYNPPRSHPSYAEWQKLKEKEAKEGEGK*
Ga0075474_1026242033300006025AqueousLTSQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKLKQKENENE*
Ga0075478_1014480533300006026AqueousMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLREKEAKEGEGK*
Ga0075478_1025782033300006026AqueousMSKLVWKRGEGWVQYNPPRSHPSYAEWQKLKEKEAKEGEGK*
Ga0075462_1003543033300006027AqueousLTSKQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKQKENENE*
Ga0075461_1024823433300006637AqueousLTSQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENKDEA*
Ga0098038_121140723300006735MarineLPQRSDKLIWKRGDGWVQYNPPRHHPQYEEWMKLKEKEKENEAKDD*
Ga0098042_100642643300006749MarineMSDKLAWKRGDGWVQFNPPRGHPQYEEWMKKKQKEKEKENGS*
Ga0070749_1021133923300006802AqueousLTSKQRSDKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEKENEKHAD*
Ga0070749_1031200423300006802AqueousMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEAKEGEG
Ga0070749_1031665723300006802AqueousLTSRQLSVKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKENDNG*
Ga0070749_1048099623300006802AqueousLTSQQLSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKQKENENE*
Ga0070749_1077040233300006802AqueousLTSKQLSGKLVWKRGDGWVQFNPPRSHPFYEEWQKLKQKEKENENE*
Ga0070754_1003196353300006810AqueousMKKKPDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKENE*
Ga0070754_1038783343300006810AqueousKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENGNTDSS*
Ga0070754_1043446433300006810AqueousKHMKKKPDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKEND*
Ga0070754_1049786623300006810AqueousLTSKQLSVKLVWKRGDGWIQFNPPRSHPSYEEWQKLKLKQKENENE*
Ga0075476_10001016173300006867AqueousMKKKPDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKEND*
Ga0075476_1012152943300006867AqueousLTSQQLSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKENKDGNL*
Ga0075477_1035701333300006869AqueousLTSQQLSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKQKENENER*
Ga0070750_1007780023300006916AqueousLTSKQHSDKLVWKRGDGWVQYNPPRSHPSYEEWKKLKEKEKENEKHAD*
Ga0070750_1007840923300006916AqueousLTSQQRSGKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEKENEKHAD*
Ga0070750_1032408213300006916AqueousLTSQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENKDGNL*
Ga0070750_1045386233300006916AqueousLTSQQLSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKENENE*
Ga0070750_1049244123300006916AqueousLTSKQHSDKLVWKRGDGWVQYNPPRSHPSYEEWKKLKEKEKQDEKHAD*
Ga0070752_120354323300007345AqueousMSKLVWKRGDGWVQYNPPRSHPSYTEWQKLKEKEAKEGEGK*
Ga0099851_110706113300007538AqueousKRGDGWVQFNPPRSHPSYEEWQKLKQKEKEKQNDG*
Ga0099849_111107623300007539AqueousMSKLVWKRGDGWVQYNPPRSHPSYAEWQKLKEKEAKEGEGS*
Ga0099849_111365513300007539AqueousLVWKRGDGWVQFNPPRSHPNYEEWQKLKQKHKENENE*
Ga0099849_132793813300007539AqueousKRGDGWVQYNPPRSHPSYEEWQKLKEKDAEKVRS*
Ga0099847_122286523300007540AqueousPNPKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEKENDG*
Ga0070751_111079513300007640AqueousKLVWKRGDGWVQYNPPRSHPSYKEWQKLKEKDAEKVRS*
Ga0070751_119783213300007640AqueousSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKLKQKENENE*
Ga0102957_125906613300009027Pond WaterMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEGKEK*
Ga0129348_108249743300010296Freshwater To Marine Saline GradientMSKLVWKRGDGWVQYNPPRSHPSYAEWQKLKEKKAKEGEGK*
Ga0129351_110274233300010300Freshwater To Marine Saline GradientLRSSGLERSMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEAKEGEGK*
Ga0136655_112504613300010316Freshwater To Marine Saline GradientKLIWKQGDGWIIFNPPRSHPLYDEWQKLKEKEKENEQRD*
Ga0163110_1179382543300012928Surface SeawaterMSDKLAWKRGDGWVQFNPPRGHPQYEEWMKKRKEK
Ga0129327_1083801823300013010Freshwater To Marine Saline GradientLVWKRGDGWVQYNPPRSHPSYAEWQKLKEKEAKEGEGK*
Ga0181373_100225153300017721MarineMSDKLAWKRGDGWVQFNPPRGHPQYEEWMKKKQKEKEKENGS
Ga0181381_106527113300017726SeawaterSKQHSDKLVWKRGDGWVQYNPPRSHPSYEEWKKLKEKEKQDEKHAD
Ga0181433_114677013300017739SeawaterKLMWKRGDGWVQYNPNPHHPCYEEWMKQKEKEKENEAKDD
Ga0181393_108503413300017748SeawaterKQRSDKLVWKRGDGWVQYNPPRSHPSYEEWKKLKEKEKENEKDSN
Ga0181552_1024554643300017824Salt MarshMSKLVWKRGDGWVQYNPPRSHPSYAEWQKLKEKEAKEGEGK
Ga0181552_1033137213300017824Salt MarshVWKRGDGWIQFNPPRSHPSYEEWQKLKQKEKENENE
Ga0181577_1056187833300017951Salt MarshGDGWIQFNPPRSHPSYEEWHKLKQKLQEKEKEDDN
Ga0181560_1007659773300018413Salt MarshMSKLVWKRGDGWVQYNPPRNHPSYAEWQKLKEKEAKEGEGK
Ga0181559_1008318623300018415Salt MarshMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEAKEGEGK
Ga0181558_1012749613300018417Salt MarshMSKLVWKRGDGWVQYNPPRSHPSYAEWHKLKEKEAKEGEGK
Ga0181558_1022516213300018417Salt MarshQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENKDV
Ga0181558_1047344513300018417Salt MarshQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENKDGNL
Ga0181591_1025340163300018424Salt MarshMSKLVWKRGDGWVQYNPPRSHPSYAEWQKLNEKEAKEGEGKCVAGIVKVK
Ga0181562_1001451983300019459Salt MarshMSKLVWKRGDGWVQYNPPRSHPSYKEWQKLKEKDAEKVRS
Ga0213862_1009915413300021347SeawaterTSQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKEKEDEGRPN
Ga0222718_1003166223300021958Estuarine WaterVWKRGDGWVQYNPPHSHPSYEEWQKLKEREKEKDG
Ga0222718_1004296353300021958Estuarine WaterMSELIWKRGDGWVQYNPPRSHPSYEEWQKLKEKERKEK
Ga0222718_1028780523300021958Estuarine WaterMSKLVWKRGDGWVQFNPPRSHPSYEEWRKLKEKEAKDNEVLPLQK
Ga0222716_1006839023300021959Estuarine WaterMSKLVWKRGDGWVQYSPPRSHPSYEEWQKLKEKEAKEGEGK
Ga0222715_1009979523300021960Estuarine WaterMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKQKEKEKDDEGRPD
Ga0222715_1031751723300021960Estuarine WaterMSELVWKRGDGWVQYNPPRSHPSYEEWQKLKEKERKEK
Ga0222713_1019839533300021962Estuarine WaterSQRPNPKLVWKRGDCWVQYNPPHSHPSYEEWQKLKEREKEKDG
Ga0222719_1002438183300021964Estuarine WaterMSKLIWKRGDSWVQYNPPRSHPSYAEWQKLKEKEAKEGEGK
Ga0222719_1013869713300021964Estuarine WaterKLVWKRGDGWVQYNPPRSHPSYEEWQKLKQKEKEKENE
Ga0222719_1052886133300021964Estuarine WaterERSMSKLVWKRGDGWVQFNPPRSHPSYEEWRKLKEKEAKDNELLPLQK
Ga0222719_1072176023300021964Estuarine WaterLTSQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENKDDESKGSL
Ga0196895_100232613300022067AqueousGGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKLKQKENENE
Ga0212021_112204113300022068AqueousMSKLVWKRGDGWVQYNPPRSHPSYAEWQKLKEKEA
Ga0212028_103719933300022071AqueousMKKKPDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKEND
Ga0224906_100158533300022074SeawaterMSKKEEKSAWKRGEGWVQYNPPRYHPCYSEWIKLKQQKEKDDAG
Ga0196897_100095163300022158AqueousGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKLKQKENENE
Ga0212027_104209313300022168AqueousSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKEKENENER
Ga0196899_100942273300022187AqueousRSMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKEKEAKEGEGK
Ga0196901_118544433300022200AqueousMSKLVWKRGDGWVQFNPPRSHPSYEEWRKLKEKEAKEGEGK
Ga0255752_1016603943300022929Salt MarshLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKQKENENE
Ga0255778_1023087043300023084Salt MarshGEGWIQFNPPRNHPSYQEWQKLKQKHKEKQNERTID
Ga0255768_1012614223300023180Salt MarshMSKLVWKRGDGWVQYNPPRSHPSYAEWKKLKEKEAKEGEGK
Ga0209992_1037482033300024344Deep SubsurfaceMSKKKGKLAWKRGDGWVQYNPPRHHPCYDEWSKKREKEANELR
(restricted) Ga0255046_1051546413300024519SeawaterMSKLVWKRGDGWVQFNPPRSHPSYEEWRKLKEKEAKDNELL
Ga0209535_109722313300025120MarineKLVWKRGDGWVQYNPPRSHPSYEEWKKLKEKEKENEKDSN
Ga0208303_108346633300025543AqueousLTSQQLSGKLVWKRGDGWVQFNPPRSHPSYEEWQKLKQKQKENENE
Ga0208149_110237433300025610AqueousMKKKPDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKA
Ga0208149_112227933300025610AqueousDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKENE
Ga0208898_100260633300025671AqueousMKKKPDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKENE
Ga0208019_110359443300025687AqueousRSMSKLVWKRGDGWVQFNPPRSHPSYEEWRKLKEKEAKEGEGK
Ga0208150_100568773300025751AqueousSSGLERSMSKLVWKRGDGWVQYNPPRSHPSYAEWQKLKEKEAKEGEGK
Ga0209137_107174533300025767MarineMSKLVWKRGDGWVQYNPPRSHPSYEEWQKLKQKEKEKDNED
Ga0208547_104621713300025828AqueousKPDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKEND
Ga0208547_112144733300025828AqueousMKKKPDKPQKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKEN
Ga0208547_121097233300025828AqueousLTSQQLSGKLVWKRGDGWIQFNPPRSHPSYEEWQKLKQKQKENENE
Ga0208645_124804413300025853AqueousLVWKRGDGWVQYNPPRSHPSYEEWQKLKQKEKENGNTDSS
Ga0208645_126019613300025853AqueousKLVWKRREGSIQFNPPRSHPSYEEWQKLKEKAKENE
Ga0348335_080027_1_1263300034374AqueousLSGKLVWKRGDGWVQYNPPRSHPSYEEWQKLKQKEKENENE


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